CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 57 0.00 57 2 1 67 1.47 68 3 2 55 3.51 57 4 1 34 2.86 35 5 0 30 0.00 30 6 1 23 4.17 24 7 0 32 0.00 32 8 0 19 0.00 19 9 1 24 4.00 25 10 0 22 0.00 22 11 1 26 3.70 27 12 0 27 0.00 27 13 0 18 0.00 18 14 0 28 0.00 28 15 0 23 0.00 23 16 1 24 4.00 25 17 0 30 0.00 30 18 1 38 2.56 39 19 0 17 0.00 17 20 1 36 2.70 37 21 0 30 0.00 30 22 1 27 3.57 28 23 0 23 0.00 23 24 0 25 0.00 25 25 0 19 0.00 19 26 0 33 0.00 33 27 0 26 0.00 26 28 2 29 6.45 31 29 0 22 0.00 22 30 0 27 0.00 27 31 0 24 0.00 24 32 0 22 0.00 22 33 0 31 0.00 31 34 1 26 3.70 27 35 0 28 0.00 28 36 0 27 0.00 27 37 0 27 0.00 27 38 0 27 0.00 27 39 1 29 3.33 30 40 0 28 0.00 28 41 2 30 6.25 32 42 0 19 0.00 19 43 1 23 4.17 24 44 0 20 0.00 20 45 0 21 0.00 21 46 0 21 0.00 21 47 0 19 0.00 19 48 0 21 0.00 21 49 0 24 0.00 24 50 1 24 4.00 25 51 0 31 0.00 31 52 0 17 0.00 17 53 0 24 0.00 24 54 0 24 0.00 24 55 0 17 0.00 17 56 0 24 0.00 24 57 1 21 4.55 22 58 1 25 3.85 26 59 0 35 0.00 35 60 0 34 0.00 34 61 0 16 0.00 16 62 0 23 0.00 23 63 1 16 5.88 17 64 0 16 0.00 16 65 0 28 0.00 28 66 0 19 0.00 19 67 0 16 0.00 16 68 0 21 0.00 21 69 0 12 0.00 12 70 0 18 0.00 18 71 0 22 0.00 22 72 0 16 0.00 16 73 0 24 0.00 24 74 0 25 0.00 25 75 0 18 0.00 18 76 0 20 0.00 20 77 1 11 8.33 12 78 0 19 0.00 19 79 0 24 0.00 24 80 0 17 0.00 17 81 1 22 4.35 23 82 1 16 5.88 17 83 0 15 0.00 15 84 0 12 0.00 12 85 0 18 0.00 18 86 0 19 0.00 19 87 1 13 7.14 14 88 0 13 0.00 13 89 0 11 0.00 11 90 0 10 0.00 10 91 0 9 0.00 9 92 0 8 0.00 8 93 0 11 0.00 11 94 0 7 0.00 7 95 0 8 0.00 8 96 0 12 0.00 12 97 0 9 0.00 9 98 0 18 0.00 18 99 1 8 11.11 9 100 0 7 0.00 7 101 0 15 0.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 27 12 69.23 39 2 17 14 54.84 31 3 11 15 42.31 26 4 3 21 12.50 24 5 2 27 6.90 29 6 2 23 8.00 25 7 2 26 7.14 28 8 2 31 6.06 33 9 0 17 0.00 17 10 3 33 8.33 36 11 2 26 7.14 28 12 0 26 0.00 26 13 0 24 0.00 24 14 0 29 0.00 29 15 1 30 3.23 31 16 0 30 0.00 30 17 0 34 0.00 34 18 0 18 0.00 18 19 1 25 3.85 26 20 0 22 0.00 22 21 1 23 4.17 24 22 2 20 9.09 22 23 0 34 0.00 34 24 0 19 0.00 19 25 0 40 0.00 40 26 0 23 0.00 23 27 0 28 0.00 28 28 1 31 3.12 32 29 0 45 0.00 45 30 0 34 0.00 34 31 0 19 0.00 19 32 0 44 0.00 44 33 4 27 12.90 31 34 0 31 0.00 31 35 0 25 0.00 25 36 1 35 2.78 36 37 0 32 0.00 32 38 1 21 4.55 22 39 1 29 3.33 30 40 0 26 0.00 26 41 0 25 0.00 25 42 0 28 0.00 28 43 0 26 0.00 26 44 1 24 4.00 25 45 1 23 4.17 24 46 0 22 0.00 22 47 0 21 0.00 21 48 1 22 4.35 23 49 1 20 4.76 21 50 0 26 0.00 26 51 0 20 0.00 20 52 0 20 0.00 20 53 0 26 0.00 26 54 0 22 0.00 22 55 0 33 0.00 33 56 0 19 0.00 19 57 1 18 5.26 19 58 0 21 0.00 21 59 0 28 0.00 28 60 0 15 0.00 15 61 0 28 0.00 28 62 0 23 0.00 23 63 1 22 4.35 23 64 0 34 0.00 34 65 0 23 0.00 23 66 0 12 0.00 12 67 0 18 0.00 18 68 0 17 0.00 17 69 0 24 0.00 24 70 0 28 0.00 28 71 0 18 0.00 18 72 0 19 0.00 19 73 0 15 0.00 15 74 0 12 0.00 12 75 0 16 0.00 16 76 0 11 0.00 11 77 0 25 0.00 25 78 0 14 0.00 14 79 0 16 0.00 16 80 0 16 0.00 16 81 0 18 0.00 18 82 0 13 0.00 13 83 0 18 0.00 18 84 0 15 0.00 15 85 0 17 0.00 17 86 0 13 0.00 13 87 0 14 0.00 14 88 1 11 8.33 12 89 1 19 5.00 20 90 0 16 0.00 16 91 1 10 9.09 11 92 0 8 0.00 8 93 2 14 12.50 16 94 0 16 0.00 16 95 0 19 0.00 19 96 1 16 5.88 17 97 0 13 0.00 13 98 0 8 0.00 8 99 0 8 0.00 8 100 1 11 8.33 12 101 2 2 50.00 4 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 9 55.00 20 2 5 10 33.33 15 3 2 21 8.70 23 4 2 13 13.33 15 5 0 43 0.00 43 6 0 29 0.00 29 7 0 42 0.00 42 8 0 41 0.00 41 9 0 45 0.00 45 10 0 26 0.00 26 11 0 38 0.00 38 12 0 39 0.00 39 13 1 41 2.38 42 14 0 38 0.00 38 15 0 51 0.00 51 16 0 47 0.00 47 17 0 48 0.00 48 18 1 52 1.89 53 19 0 49 0.00 49 20 0 50 0.00 50 21 0 37 0.00 37 22 0 38 0.00 38 23 0 39 0.00 39 24 0 50 0.00 50 25 0 48 0.00 48 26 1 55 1.79 56 27 1 46 2.13 47 28 0 41 0.00 41 29 0 44 0.00 44 30 1 40 2.44 41 31 1 53 1.85 54 32 0 43 0.00 43 33 1 37 2.63 38 34 0 36 0.00 36 35 0 31 0.00 31 36 0 42 0.00 42 37 0 32 0.00 32 38 0 39 0.00 39 39 0 45 0.00 45 40 0 38 0.00 38 41 0 24 0.00 24 42 0 45 0.00 45 43 0 33 0.00 33 44 0 42 0.00 42 45 0 40 0.00 40 46 0 41 0.00 41 47 0 40 0.00 40 48 1 41 2.38 42 49 0 34 0.00 34 50 0 32 0.00 32 51 0 37 0.00 37 52 0 33 0.00 33 53 0 38 0.00 38 54 0 44 0.00 44 55 0 33 0.00 33 56 0 33 0.00 33 57 0 37 0.00 37 58 0 19 0.00 19 59 0 25 0.00 25 60 0 25 0.00 25 61 0 22 0.00 22 62 0 37 0.00 37 63 0 31 0.00 31 64 0 32 0.00 32 65 0 25 0.00 25 66 0 27 0.00 27 67 0 26 0.00 26 68 0 33 0.00 33 69 1 27 3.57 28 70 0 24 0.00 24 71 0 21 0.00 21 72 0 26 0.00 26 73 0 21 0.00 21 74 0 18 0.00 18 75 0 23 0.00 23 76 0 27 0.00 27 77 0 35 0.00 35 78 0 32 0.00 32 79 0 30 0.00 30 80 0 23 0.00 23 81 0 17 0.00 17 82 0 14 0.00 14 83 0 21 0.00 21 84 0 24 0.00 24 85 1 27 3.57 28 86 0 19 0.00 19 87 1 16 5.88 17 88 1 19 5.00 20 89 0 20 0.00 20 90 0 20 0.00 20 91 0 18 0.00 18 92 0 17 0.00 17 93 0 23 0.00 23 94 0 16 0.00 16 95 0 21 0.00 21 96 0 17 0.00 17 97 0 14 0.00 14 98 0 10 0.00 10 99 1 7 12.50 8 100 0 12 0.00 12 101 0 15 0.00 15 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 7 22.22 9 2 2 6 25.00 8 3 1 15 6.25 16 4 1 12 7.69 13 5 0 18 0.00 18 6 0 5 0.00 5 7 0 15 0.00 15 8 0 5 0.00 5 9 0 13 0.00 13 10 1 7 12.50 8 11 0 10 0.00 10 12 0 14 0.00 14 13 0 4 0.00 4 14 0 10 0.00 10 15 0 10 0.00 10 16 0 4 0.00 4 17 0 12 0.00 12 18 0 7 0.00 7 19 0 7 0.00 7 20 0 10 0.00 10 21 0 7 0.00 7 22 0 3 0.00 3 23 0 9 0.00 9 24 0 3 0.00 3 25 0 9 0.00 9 26 0 11 0.00 11 27 0 9 0.00 9 28 0 8 0.00 8 29 0 4 0.00 4 30 0 6 0.00 6 31 0 9 0.00 9 32 0 8 0.00 8 33 0 10 0.00 10 34 0 5 0.00 5 35 0 4 0.00 4 36 0 4 0.00 4 37 0 6 0.00 6 38 0 8 0.00 8 39 0 5 0.00 5 40 0 2 0.00 2 41 0 6 0.00 6 42 0 6 0.00 6 43 0 7 0.00 7 44 0 4 0.00 4 45 0 2 0.00 2 46 0 6 0.00 6 47 0 8 0.00 8 48 0 6 0.00 6 49 0 7 0.00 7 50 0 6 0.00 6 51 0 4 0.00 4 52 0 7 0.00 7 53 0 2 0.00 2 54 0 7 0.00 7 55 0 4 0.00 4 56 0 3 0.00 3 57 0 6 0.00 6 58 0 2 0.00 2 59 0 8 0.00 8 60 0 5 0.00 5 61 0 1 0.00 1 62 0 2 0.00 2 63 1 3 25.00 4 64 0 3 0.00 3 65 0 7 0.00 7 66 1 3 25.00 4 67 0 7 0.00 7 68 0 4 0.00 4 69 0 8 0.00 8 70 0 2 0.00 2 71 0 5 0.00 5 72 0 1 0.00 1 73 0 4 0.00 4 74 0 2 0.00 2 75 0 2 0.00 2 76 0 3 0.00 3 77 0 3 0.00 3 78 0 1 0.00 1 79 0 6 0.00 6 80 0 4 0.00 4 81 0 4 0.00 4 82 0 1 0.00 1 83 0 4 0.00 4 84 0 3 0.00 3 85 0 2 0.00 2 86 0 1 0.00 1 87 0 1 0.00 1 88 0 2 0.00 2 89 0 3 0.00 3 90 0 4 0.00 4 91 0 3 0.00 3 92 0 1 0.00 1 93 0 3 0.00 3 94 0 1 0.00 1 95 0 3 0.00 3 96 0 5 0.00 5 97 0 2 0.00 2 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 7 12.50 8 2 0 8 0.00 8 3 2 12 14.29 14 4 4 8 33.33 12 5 0 16 0.00 16 6 2 11 15.38 13 7 0 7 0.00 7 8 1 10 9.09 11 9 1 6 14.29 7 10 0 12 0.00 12 11 0 11 0.00 11 12 1 11 8.33 12 13 0 8 0.00 8 14 0 9 0.00 9 15 0 11 0.00 11 16 0 7 0.00 7 17 0 7 0.00 7 18 0 7 0.00 7 19 0 5 0.00 5 20 0 8 0.00 8 21 0 5 0.00 5 22 0 8 0.00 8 23 0 8 0.00 8 24 0 3 0.00 3 25 0 3 0.00 3 26 0 4 0.00 4 27 1 6 14.29 7 28 0 5 0.00 5 29 0 4 0.00 4 30 0 2 0.00 2 31 0 6 0.00 6 32 0 4 0.00 4 33 0 9 0.00 9 34 0 8 0.00 8 35 0 6 0.00 6 36 0 4 0.00 4 37 0 12 0.00 12 38 0 9 0.00 9 39 0 10 0.00 10 40 0 4 0.00 4 41 0 6 0.00 6 42 0 10 0.00 10 43 0 6 0.00 6 44 0 3 0.00 3 45 0 5 0.00 5 46 0 8 0.00 8 47 0 5 0.00 5 48 0 5 0.00 5 49 0 4 0.00 4 50 0 5 0.00 5 51 0 6 0.00 6 52 0 8 0.00 8 53 0 7 0.00 7 54 0 6 0.00 6 55 0 9 0.00 9 56 1 3 25.00 4 57 0 7 0.00 7 58 0 3 0.00 3 59 0 8 0.00 8 60 0 5 0.00 5 61 0 5 0.00 5 62 0 2 0.00 2 63 0 3 0.00 3 64 0 2 0.00 2 65 1 1 50.00 2 66 0 4 0.00 4 67 2 8 20.00 10 68 1 3 25.00 4 69 0 6 0.00 6 70 0 4 0.00 4 71 1 3 25.00 4 72 0 5 0.00 5 73 0 5 0.00 5 74 0 8 0.00 8 75 0 3 0.00 3 76 0 2 0.00 2 77 0 4 0.00 4 78 0 8 0.00 8 79 0 2 0.00 2 80 0 7 0.00 7 81 0 2 0.00 2 82 0 3 0.00 3 83 0 1 0.00 1 84 0 2 0.00 2 85 1 3 25.00 4 86 0 2 0.00 2 87 0 3 0.00 3 88 0 2 0.00 2 89 0 1 0.00 1 90 0 1 0.00 1 91 0 3 0.00 3 92 0 5 0.00 5 93 0 2 0.00 2 94 0 1 0.00 1 95 0 2 0.00 2 96 0 0 0 97 0 6 0.00 6 98 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 5 0.00 5 2 1 6 14.29 7 3 1 5 16.67 6 4 1 3 25.00 4 5 0 7 0.00 7 6 1 5 16.67 6 7 0 9 0.00 9 8 0 14 0.00 14 9 0 18 0.00 18 10 0 17 0.00 17 11 1 15 6.25 16 12 1 15 6.25 16 13 0 20 0.00 20 14 0 19 0.00 19 15 0 18 0.00 18 16 0 10 0.00 10 17 0 21 0.00 21 18 1 9 10.00 10 19 0 17 0.00 17 20 0 15 0.00 15 21 1 9 10.00 10 22 0 12 0.00 12 23 1 20 4.76 21 24 0 16 0.00 16 25 0 14 0.00 14 26 0 14 0.00 14 27 1 9 10.00 10 28 0 22 0.00 22 29 0 7 0.00 7 30 0 7 0.00 7 31 0 12 0.00 12 32 0 10 0.00 10 33 0 12 0.00 12 34 1 10 9.09 11 35 0 12 0.00 12 36 0 18 0.00 18 37 0 7 0.00 7 38 0 15 0.00 15 39 0 16 0.00 16 40 1 15 6.25 16 41 0 9 0.00 9 42 0 9 0.00 9 43 0 12 0.00 12 44 0 17 0.00 17 45 0 12 0.00 12 46 0 10 0.00 10 47 0 8 0.00 8 48 0 14 0.00 14 49 0 8 0.00 8 50 0 9 0.00 9 51 0 11 0.00 11 52 0 8 0.00 8 53 0 10 0.00 10 54 0 12 0.00 12 55 0 6 0.00 6 56 0 9 0.00 9 57 0 5 0.00 5 58 1 10 9.09 11 59 0 7 0.00 7 60 0 11 0.00 11 61 0 5 0.00 5 62 0 4 0.00 4 63 0 11 0.00 11 64 0 10 0.00 10 65 0 3 0.00 3 66 0 2 0.00 2 67 0 5 0.00 5 68 0 11 0.00 11 69 0 5 0.00 5 70 0 7 0.00 7 71 0 8 0.00 8 72 0 8 0.00 8 73 0 8 0.00 8 74 1 8 11.11 9 75 1 5 16.67 6 76 0 5 0.00 5 77 0 1 0.00 1 78 0 5 0.00 5 79 0 5 0.00 5 80 0 4 0.00 4 81 0 8 0.00 8 82 0 8 0.00 8 83 0 8 0.00 8 84 0 3 0.00 3 85 0 6 0.00 6 86 0 8 0.00 8 87 0 7 0.00 7 88 1 11 8.33 12 89 0 2 0.00 2 90 0 3 0.00 3 91 0 7 0.00 7 92 0 6 0.00 6 93 0 10 0.00 10 94 0 5 0.00 5 95 0 2 0.00 2 96 0 1 0.00 1 97 0 7 0.00 7 98 0 10 0.00 10