/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
469
Pairs without alignments under any condition
99531
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
16654
Methylated C's in CpG context
60
Methylated C's in CHG context
210
Methylated C's in CHH context
68
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
4765
Unmethylated C's in CHG context
4711
Unmethylated C's in CHH context
6840
Unmethylated C's in Unknown context
11
Percentage methylation (CpG context)
1.2%
Percentage methylation (CHG context)
4.3%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
305
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
164
original bottom strand
Deduplication
Alignments analysed
469
Unique alignments
431
Duplicates removed
38
Duplicated alignments were found at 26 different positions