/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
409
Pairs without alignments under any condition
99591
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
15161
Methylated C's in CpG context
59
Methylated C's in CHG context
153
Methylated C's in CHH context
87
Methylated C's in Unknown context
4
Unmethylated C's in CpG context
4243
Unmethylated C's in CHG context
4218
Unmethylated C's in CHH context
6401
Unmethylated C's in Unknown context
3
Percentage methylation (CpG context)
1.4%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
280
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
129
original bottom strand
Deduplication
Alignments analysed
409
Unique alignments
380
Duplicates removed
29
Duplicated alignments were found at 19 different positions
