CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 75 5.06 79 2 1 79 1.25 80 3 2 81 2.41 83 4 0 44 0.00 44 5 1 34 2.86 35 6 0 30 0.00 30 7 0 40 0.00 40 8 0 29 0.00 29 9 0 35 0.00 35 10 0 37 0.00 37 11 0 35 0.00 35 12 0 32 0.00 32 13 0 27 0.00 27 14 0 30 0.00 30 15 0 44 0.00 44 16 0 37 0.00 37 17 0 38 0.00 38 18 1 40 2.44 41 19 1 41 2.38 42 20 0 42 0.00 42 21 0 48 0.00 48 22 0 37 0.00 37 23 0 36 0.00 36 24 0 37 0.00 37 25 0 27 0.00 27 26 0 37 0.00 37 27 1 34 2.86 35 28 0 44 0.00 44 29 1 41 2.38 42 30 0 32 0.00 32 31 1 43 2.27 44 32 0 32 0.00 32 33 0 38 0.00 38 34 0 31 0.00 31 35 1 39 2.50 40 36 1 46 2.13 47 37 0 39 0.00 39 38 1 30 3.23 31 39 1 50 1.96 51 40 0 35 0.00 35 41 0 26 0.00 26 42 0 36 0.00 36 43 0 34 0.00 34 44 1 28 3.45 29 45 0 33 0.00 33 46 0 34 0.00 34 47 0 28 0.00 28 48 0 32 0.00 32 49 1 32 3.03 33 50 1 41 2.38 42 51 1 36 2.70 37 52 0 32 0.00 32 53 0 26 0.00 26 54 0 27 0.00 27 55 1 27 3.57 28 56 1 35 2.78 36 57 0 34 0.00 34 58 0 30 0.00 30 59 0 49 0.00 49 60 0 33 0.00 33 61 0 34 0.00 34 62 1 34 2.86 35 63 0 32 0.00 32 64 0 21 0.00 21 65 0 36 0.00 36 66 0 21 0.00 21 67 0 27 0.00 27 68 0 22 0.00 22 69 0 20 0.00 20 70 2 22 8.33 24 71 0 21 0.00 21 72 0 18 0.00 18 73 1 17 5.56 18 74 1 29 3.33 30 75 0 22 0.00 22 76 0 31 0.00 31 77 0 13 0.00 13 78 1 16 5.88 17 79 0 21 0.00 21 80 0 25 0.00 25 81 2 31 6.06 33 82 0 24 0.00 24 83 0 14 0.00 14 84 0 20 0.00 20 85 0 26 0.00 26 86 0 22 0.00 22 87 0 23 0.00 23 88 1 20 4.76 21 89 0 14 0.00 14 90 0 17 0.00 17 91 0 19 0.00 19 92 0 18 0.00 18 93 0 14 0.00 14 94 0 13 0.00 13 95 0 17 0.00 17 96 0 17 0.00 17 97 0 14 0.00 14 98 0 15 0.00 15 99 0 17 0.00 17 100 0 20 0.00 20 101 0 18 0.00 18 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 39 26 60.00 65 2 37 13 74.00 50 3 11 29 27.50 40 4 3 37 7.50 40 5 4 23 14.81 27 6 4 27 12.90 31 7 3 41 6.82 44 8 0 48 0.00 48 9 1 34 2.86 35 10 0 37 0.00 37 11 1 48 2.04 49 12 1 34 2.86 35 13 0 35 0.00 35 14 1 41 2.38 42 15 0 48 0.00 48 16 0 29 0.00 29 17 0 46 0.00 46 18 1 40 2.44 41 19 2 34 5.56 36 20 1 39 2.50 40 21 0 35 0.00 35 22 1 22 4.35 23 23 2 46 4.17 48 24 1 31 3.12 32 25 0 39 0.00 39 26 1 49 2.00 50 27 0 34 0.00 34 28 2 32 5.88 34 29 0 40 0.00 40 30 3 45 6.25 48 31 1 36 2.70 37 32 1 53 1.85 54 33 0 41 0.00 41 34 2 35 5.41 37 35 0 43 0.00 43 36 0 47 0.00 47 37 2 28 6.67 30 38 1 42 2.33 43 39 0 40 0.00 40 40 0 36 0.00 36 41 1 31 3.12 32 42 0 41 0.00 41 43 0 33 0.00 33 44 0 33 0.00 33 45 0 32 0.00 32 46 0 28 0.00 28 47 1 41 2.38 42 48 0 28 0.00 28 49 0 34 0.00 34 50 2 22 8.33 24 51 0 35 0.00 35 52 1 26 3.70 27 53 1 29 3.33 30 54 0 35 0.00 35 55 0 37 0.00 37 56 3 30 9.09 33 57 0 28 0.00 28 58 0 34 0.00 34 59 1 34 2.86 35 60 0 33 0.00 33 61 0 36 0.00 36 62 0 33 0.00 33 63 0 21 0.00 21 64 2 44 4.35 46 65 0 22 0.00 22 66 1 32 3.03 33 67 0 27 0.00 27 68 0 23 0.00 23 69 2 24 7.69 26 70 1 36 2.70 37 71 0 21 0.00 21 72 0 21 0.00 21 73 0 19 0.00 19 74 1 29 3.33 30 75 1 29 3.33 30 76 0 21 0.00 21 77 0 21 0.00 21 78 0 29 0.00 29 79 0 20 0.00 20 80 1 21 4.55 22 81 0 28 0.00 28 82 0 24 0.00 24 83 0 24 0.00 24 84 0 13 0.00 13 85 0 14 0.00 14 86 1 21 4.55 22 87 1 17 5.56 18 88 0 17 0.00 17 89 1 17 5.56 18 90 0 13 0.00 13 91 1 17 5.56 18 92 0 10 0.00 10 93 0 14 0.00 14 94 1 12 7.69 13 95 0 27 0.00 27 96 0 21 0.00 21 97 3 10 23.08 13 98 1 13 7.14 14 99 0 10 0.00 10 100 0 9 0.00 9 101 2 10 16.67 12 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9 10 47.37 19 2 4 11 26.67 15 3 4 36 10.00 40 4 2 31 6.06 33 5 1 41 2.38 42 6 1 49 2.00 50 7 2 52 3.70 54 8 0 41 0.00 41 9 2 37 5.13 39 10 1 57 1.72 58 11 0 47 0.00 47 12 0 48 0.00 48 13 0 39 0.00 39 14 0 58 0.00 58 15 1 54 1.82 55 16 1 58 1.69 59 17 0 65 0.00 65 18 0 59 0.00 59 19 0 61 0.00 61 20 0 52 0.00 52 21 0 47 0.00 47 22 1 60 1.64 61 23 0 51 0.00 51 24 1 69 1.43 70 25 0 58 0.00 58 26 0 74 0.00 74 27 0 56 0.00 56 28 1 54 1.82 55 29 1 78 1.27 79 30 1 53 1.85 54 31 1 66 1.49 67 32 1 61 1.61 62 33 0 71 0.00 71 34 0 62 0.00 62 35 0 55 0.00 55 36 0 46 0.00 46 37 0 38 0.00 38 38 0 52 0.00 52 39 0 53 0.00 53 40 0 59 0.00 59 41 0 48 0.00 48 42 0 60 0.00 60 43 0 47 0.00 47 44 0 61 0.00 61 45 0 59 0.00 59 46 0 52 0.00 52 47 0 60 0.00 60 48 0 57 0.00 57 49 0 51 0.00 51 50 0 53 0.00 53 51 1 42 2.33 43 52 0 54 0.00 54 53 0 57 0.00 57 54 0 51 0.00 51 55 2 36 5.26 38 56 0 48 0.00 48 57 0 49 0.00 49 58 0 31 0.00 31 59 0 28 0.00 28 60 0 40 0.00 40 61 0 45 0.00 45 62 0 44 0.00 44 63 0 47 0.00 47 64 0 35 0.00 35 65 1 38 2.56 39 66 1 35 2.78 36 67 0 50 0.00 50 68 0 38 0.00 38 69 0 37 0.00 37 70 0 37 0.00 37 71 1 34 2.86 35 72 0 38 0.00 38 73 0 39 0.00 39 74 0 45 0.00 45 75 0 29 0.00 29 76 0 28 0.00 28 77 0 41 0.00 41 78 1 48 2.04 49 79 0 35 0.00 35 80 1 27 3.57 28 81 0 21 0.00 21 82 0 18 0.00 18 83 0 27 0.00 27 84 0 31 0.00 31 85 1 32 3.03 33 86 0 29 0.00 29 87 0 20 0.00 20 88 0 14 0.00 14 89 0 21 0.00 21 90 0 30 0.00 30 91 0 34 0.00 34 92 0 30 0.00 30 93 0 17 0.00 17 94 0 29 0.00 29 95 0 33 0.00 33 96 0 18 0.00 18 97 0 24 0.00 24 98 0 17 0.00 17 99 0 13 0.00 13 100 0 20 0.00 20 101 0 23 0.00 23 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 11 8.33 12 2 5 12 29.41 17 3 2 19 9.52 21 4 3 14 17.65 17 5 0 17 0.00 17 6 0 18 0.00 18 7 0 13 0.00 13 8 0 16 0.00 16 9 0 18 0.00 18 10 0 16 0.00 16 11 0 13 0.00 13 12 0 16 0.00 16 13 0 12 0.00 12 14 0 8 0.00 8 15 0 14 0.00 14 16 0 9 0.00 9 17 0 6 0.00 6 18 0 11 0.00 11 19 0 10 0.00 10 20 0 15 0.00 15 21 0 6 0.00 6 22 0 4 0.00 4 23 0 16 0.00 16 24 0 15 0.00 15 25 0 14 0.00 14 26 0 17 0.00 17 27 0 7 0.00 7 28 0 6 0.00 6 29 0 14 0.00 14 30 0 7 0.00 7 31 0 16 0.00 16 32 0 14 0.00 14 33 0 12 0.00 12 34 0 12 0.00 12 35 0 7 0.00 7 36 0 9 0.00 9 37 0 9 0.00 9 38 0 7 0.00 7 39 1 4 20.00 5 40 0 8 0.00 8 41 0 7 0.00 7 42 0 9 0.00 9 43 0 6 0.00 6 44 0 7 0.00 7 45 0 2 0.00 2 46 0 3 0.00 3 47 0 6 0.00 6 48 0 10 0.00 10 49 0 8 0.00 8 50 1 6 14.29 7 51 0 4 0.00 4 52 0 4 0.00 4 53 0 1 0.00 1 54 0 3 0.00 3 55 1 2 33.33 3 56 0 2 0.00 2 57 0 2 0.00 2 58 0 5 0.00 5 59 0 7 0.00 7 60 0 3 0.00 3 61 0 5 0.00 5 62 0 4 0.00 4 63 0 4 0.00 4 64 0 10 0.00 10 65 0 6 0.00 6 66 0 3 0.00 3 67 0 2 0.00 2 68 0 4 0.00 4 69 1 2 33.33 3 70 0 3 0.00 3 71 0 4 0.00 4 72 0 3 0.00 3 73 0 3 0.00 3 74 0 3 0.00 3 75 0 3 0.00 3 76 0 6 0.00 6 77 0 6 0.00 6 78 0 6 0.00 6 79 0 1 0.00 1 80 0 8 0.00 8 81 0 4 0.00 4 82 0 2 0.00 2 83 0 5 0.00 5 84 0 4 0.00 4 85 0 4 0.00 4 86 0 1 0.00 1 87 0 3 0.00 3 88 0 6 0.00 6 89 0 3 0.00 3 90 0 3 0.00 3 91 0 2 0.00 2 92 0 2 0.00 2 93 0 2 0.00 2 94 0 3 0.00 3 95 0 2 0.00 2 96 1 6 14.29 7 97 0 2 0.00 2 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 8 11.11 9 2 2 10 16.67 12 3 3 14 17.65 17 4 4 11 26.67 15 5 0 17 0.00 17 6 0 12 0.00 12 7 0 19 0.00 19 8 0 9 0.00 9 9 0 12 0.00 12 10 0 19 0.00 19 11 0 8 0.00 8 12 0 14 0.00 14 13 0 12 0.00 12 14 0 16 0.00 16 15 0 21 0.00 21 16 0 10 0.00 10 17 0 12 0.00 12 18 0 12 0.00 12 19 0 15 0.00 15 20 0 11 0.00 11 21 0 9 0.00 9 22 0 13 0.00 13 23 0 3 0.00 3 24 0 11 0.00 11 25 0 7 0.00 7 26 2 5 28.57 7 27 0 8 0.00 8 28 0 12 0.00 12 29 0 11 0.00 11 30 0 8 0.00 8 31 0 6 0.00 6 32 0 10 0.00 10 33 0 11 0.00 11 34 1 7 12.50 8 35 0 5 0.00 5 36 0 13 0.00 13 37 0 9 0.00 9 38 0 10 0.00 10 39 0 7 0.00 7 40 0 8 0.00 8 41 0 6 0.00 6 42 0 5 0.00 5 43 0 5 0.00 5 44 0 11 0.00 11 45 0 9 0.00 9 46 0 6 0.00 6 47 0 8 0.00 8 48 0 13 0.00 13 49 0 7 0.00 7 50 1 8 11.11 9 51 0 8 0.00 8 52 0 10 0.00 10 53 0 6 0.00 6 54 0 8 0.00 8 55 0 4 0.00 4 56 0 5 0.00 5 57 0 6 0.00 6 58 0 6 0.00 6 59 0 8 0.00 8 60 0 7 0.00 7 61 0 3 0.00 3 62 0 8 0.00 8 63 0 2 0.00 2 64 0 2 0.00 2 65 0 2 0.00 2 66 0 4 0.00 4 67 1 3 25.00 4 68 1 6 14.29 7 69 0 5 0.00 5 70 0 6 0.00 6 71 0 4 0.00 4 72 0 4 0.00 4 73 0 5 0.00 5 74 0 4 0.00 4 75 0 5 0.00 5 76 0 2 0.00 2 77 0 2 0.00 2 78 0 6 0.00 6 79 0 3 0.00 3 80 0 3 0.00 3 81 0 3 0.00 3 82 0 3 0.00 3 83 0 5 0.00 5 84 0 5 0.00 5 85 1 5 16.67 6 86 0 5 0.00 5 87 0 4 0.00 4 88 0 3 0.00 3 89 0 6 0.00 6 90 0 3 0.00 3 91 0 2 0.00 2 92 1 3 25.00 4 93 0 3 0.00 3 94 0 0 0 95 0 2 0.00 2 96 1 3 25.00 4 97 0 6 0.00 6 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 6 14.29 7 2 1 5 16.67 6 3 0 4 0.00 4 4 1 6 14.29 7 5 1 10 9.09 11 6 0 13 0.00 13 7 0 15 0.00 15 8 0 28 0.00 28 9 0 23 0.00 23 10 0 31 0.00 31 11 1 24 4.00 25 12 0 23 0.00 23 13 0 24 0.00 24 14 0 27 0.00 27 15 1 27 3.57 28 16 1 21 4.55 22 17 0 22 0.00 22 18 0 26 0.00 26 19 1 25 3.85 26 20 0 12 0.00 12 21 0 15 0.00 15 22 0 17 0.00 17 23 0 24 0.00 24 24 0 13 0.00 13 25 0 12 0.00 12 26 0 14 0.00 14 27 0 11 0.00 11 28 0 21 0.00 21 29 0 21 0.00 21 30 0 6 0.00 6 31 0 10 0.00 10 32 0 9 0.00 9 33 0 18 0.00 18 34 0 19 0.00 19 35 0 10 0.00 10 36 0 21 0.00 21 37 0 12 0.00 12 38 0 16 0.00 16 39 0 10 0.00 10 40 0 15 0.00 15 41 0 8 0.00 8 42 0 6 0.00 6 43 0 13 0.00 13 44 0 12 0.00 12 45 0 12 0.00 12 46 0 13 0.00 13 47 0 15 0.00 15 48 0 10 0.00 10 49 0 8 0.00 8 50 0 9 0.00 9 51 0 10 0.00 10 52 0 11 0.00 11 53 0 10 0.00 10 54 0 13 0.00 13 55 0 12 0.00 12 56 0 8 0.00 8 57 0 6 0.00 6 58 0 2 0.00 2 59 0 7 0.00 7 60 0 11 0.00 11 61 0 8 0.00 8 62 0 7 0.00 7 63 0 11 0.00 11 64 0 16 0.00 16 65 0 10 0.00 10 66 0 6 0.00 6 67 0 8 0.00 8 68 0 14 0.00 14 69 0 7 0.00 7 70 1 8 11.11 9 71 0 10 0.00 10 72 0 6 0.00 6 73 0 3 0.00 3 74 0 9 0.00 9 75 0 10 0.00 10 76 0 7 0.00 7 77 0 3 0.00 3 78 0 6 0.00 6 79 0 12 0.00 12 80 1 12 7.69 13 81 0 4 0.00 4 82 0 10 0.00 10 83 0 8 0.00 8 84 0 6 0.00 6 85 0 7 0.00 7 86 0 5 0.00 5 87 0 6 0.00 6 88 0 5 0.00 5 89 0 5 0.00 5 90 0 5 0.00 5 91 0 6 0.00 6 92 0 9 0.00 9 93 0 7 0.00 7 94 0 7 0.00 7 95 0 7 0.00 7 96 0 4 0.00 4 97 0 7 0.00 7 98 0 9 0.00 9