/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-215_S31_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
689
Pairs without alignments under any condition
99311
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
23984
Methylated C's in CpG context
80
Methylated C's in CHG context
340
Methylated C's in CHH context
102
Methylated C's in Unknown context
8
Unmethylated C's in CpG context
7002
Unmethylated C's in CHG context
6800
Unmethylated C's in CHH context
9660
Unmethylated C's in Unknown context
5
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
4.8%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
494
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
195
original bottom strand
Deduplication
Alignments analysed
689
Unique alignments
604
Duplicates removed
85
Duplicated alignments were found at 52 different positions
