CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 82 1.20 83 2 0 72 0.00 72 3 0 55 0.00 55 4 0 50 0.00 50 5 0 35 0.00 35 6 1 10 9.09 11 7 0 35 0.00 35 8 0 22 0.00 22 9 0 33 0.00 33 10 2 41 4.65 43 11 0 29 0.00 29 12 0 35 0.00 35 13 0 22 0.00 22 14 0 34 0.00 34 15 0 20 0.00 20 16 0 27 0.00 27 17 1 29 3.33 30 18 0 42 0.00 42 19 1 34 2.86 35 20 0 38 0.00 38 21 0 52 0.00 52 22 0 42 0.00 42 23 1 38 2.56 39 24 0 43 0.00 43 25 0 30 0.00 30 26 0 30 0.00 30 27 0 36 0.00 36 28 0 34 0.00 34 29 0 35 0.00 35 30 0 33 0.00 33 31 1 41 2.38 42 32 0 39 0.00 39 33 0 29 0.00 29 34 0 42 0.00 42 35 1 33 2.94 34 36 0 32 0.00 32 37 0 42 0.00 42 38 0 26 0.00 26 39 1 42 2.33 43 40 0 31 0.00 31 41 0 27 0.00 27 42 1 37 2.63 38 43 0 30 0.00 30 44 0 25 0.00 25 45 1 38 2.56 39 46 1 34 2.86 35 47 0 30 0.00 30 48 0 30 0.00 30 49 0 41 0.00 41 50 0 35 0.00 35 51 0 44 0.00 44 52 0 33 0.00 33 53 1 29 3.33 30 54 1 32 3.03 33 55 0 33 0.00 33 56 1 31 3.12 32 57 0 38 0.00 38 58 0 42 0.00 42 59 0 41 0.00 41 60 1 33 2.94 34 61 1 41 2.38 42 62 1 27 3.57 28 63 0 26 0.00 26 64 0 26 0.00 26 65 0 33 0.00 33 66 0 22 0.00 22 67 1 40 2.44 41 68 0 19 0.00 19 69 0 32 0.00 32 70 0 25 0.00 25 71 0 33 0.00 33 72 0 30 0.00 30 73 0 32 0.00 32 74 0 23 0.00 23 75 0 24 0.00 24 76 0 28 0.00 28 77 0 21 0.00 21 78 0 16 0.00 16 79 0 34 0.00 34 80 0 28 0.00 28 81 0 33 0.00 33 82 0 26 0.00 26 83 0 24 0.00 24 84 0 19 0.00 19 85 0 22 0.00 22 86 1 18 5.26 19 87 0 24 0.00 24 88 1 24 4.00 25 89 0 19 0.00 19 90 0 18 0.00 18 91 0 29 0.00 29 92 0 15 0.00 15 93 0 25 0.00 25 94 2 16 11.11 18 95 0 20 0.00 20 96 0 18 0.00 18 97 0 20 0.00 20 98 0 29 0.00 29 99 0 20 0.00 20 100 1 25 3.85 26 101 0 30 0.00 30 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 30 17 63.83 47 2 21 13 61.76 34 3 10 26 27.78 36 4 2 33 5.71 35 5 1 24 4.00 25 6 3 23 11.54 26 7 1 32 3.03 33 8 2 37 5.13 39 9 1 30 3.23 31 10 0 31 0.00 31 11 1 37 2.63 38 12 0 33 0.00 33 13 0 29 0.00 29 14 0 38 0.00 38 15 1 28 3.45 29 16 0 39 0.00 39 17 0 37 0.00 37 18 0 41 0.00 41 19 0 34 0.00 34 20 0 33 0.00 33 21 1 35 2.78 36 22 1 30 3.23 31 23 0 33 0.00 33 24 1 35 2.78 36 25 0 46 0.00 46 26 1 31 3.12 32 27 1 45 2.17 46 28 2 38 5.00 40 29 0 46 0.00 46 30 1 37 2.63 38 31 0 39 0.00 39 32 2 35 5.41 37 33 1 40 2.44 41 34 0 31 0.00 31 35 0 36 0.00 36 36 2 50 3.85 52 37 1 33 2.94 34 38 2 35 5.41 37 39 0 32 0.00 32 40 0 45 0.00 45 41 1 41 2.38 42 42 0 37 0.00 37 43 0 29 0.00 29 44 0 41 0.00 41 45 0 33 0.00 33 46 2 33 5.71 35 47 0 43 0.00 43 48 0 40 0.00 40 49 0 31 0.00 31 50 3 25 10.71 28 51 0 22 0.00 22 52 0 31 0.00 31 53 0 42 0.00 42 54 0 43 0.00 43 55 0 29 0.00 29 56 1 40 2.44 41 57 1 34 2.86 35 58 1 23 4.17 24 59 1 24 4.00 25 60 0 30 0.00 30 61 1 30 3.23 31 62 1 29 3.33 30 63 0 29 0.00 29 64 3 39 7.14 42 65 0 15 0.00 15 66 1 34 2.86 35 67 1 33 2.94 34 68 1 23 4.17 24 69 1 32 3.03 33 70 0 35 0.00 35 71 0 25 0.00 25 72 0 31 0.00 31 73 0 28 0.00 28 74 0 30 0.00 30 75 0 19 0.00 19 76 0 23 0.00 23 77 0 23 0.00 23 78 0 29 0.00 29 79 1 32 3.03 33 80 0 24 0.00 24 81 0 22 0.00 22 82 0 20 0.00 20 83 1 17 5.56 18 84 0 25 0.00 25 85 0 21 0.00 21 86 0 25 0.00 25 87 0 29 0.00 29 88 1 20 4.76 21 89 0 14 0.00 14 90 4 20 16.67 24 91 2 15 11.76 17 92 2 25 7.41 27 93 1 16 5.88 17 94 0 28 0.00 28 95 0 26 0.00 26 96 0 15 0.00 15 97 1 13 7.14 14 98 1 15 6.25 16 99 1 12 7.69 13 100 0 12 0.00 12 101 0 16 0.00 16 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6 15 28.57 21 2 6 8 42.86 14 3 1 30 3.23 31 4 0 31 0.00 31 5 5 33 13.16 38 6 1 39 2.50 40 7 0 55 0.00 55 8 0 57 0.00 57 9 0 39 0.00 39 10 1 40 2.44 41 11 0 41 0.00 41 12 0 43 0.00 43 13 0 49 0.00 49 14 1 57 1.72 58 15 0 52 0.00 52 16 1 82 1.20 83 17 2 65 2.99 67 18 0 52 0.00 52 19 0 56 0.00 56 20 1 45 2.17 46 21 0 48 0.00 48 22 0 52 0.00 52 23 0 59 0.00 59 24 0 73 0.00 73 25 0 71 0.00 71 26 0 81 0.00 81 27 0 69 0.00 69 28 0 55 0.00 55 29 0 66 0.00 66 30 1 48 2.04 49 31 0 79 0.00 79 32 1 67 1.47 68 33 0 57 0.00 57 34 0 45 0.00 45 35 0 53 0.00 53 36 0 47 0.00 47 37 0 38 0.00 38 38 0 48 0.00 48 39 0 52 0.00 52 40 2 37 5.13 39 41 0 48 0.00 48 42 0 44 0.00 44 43 0 58 0.00 58 44 1 65 1.52 66 45 0 67 0.00 67 46 0 72 0.00 72 47 0 62 0.00 62 48 0 48 0.00 48 49 1 56 1.75 57 50 0 52 0.00 52 51 0 56 0.00 56 52 1 56 1.75 57 53 1 66 1.49 67 54 0 50 0.00 50 55 0 57 0.00 57 56 0 40 0.00 40 57 0 49 0.00 49 58 0 54 0.00 54 59 0 47 0.00 47 60 0 49 0.00 49 61 0 42 0.00 42 62 0 44 0.00 44 63 1 60 1.64 61 64 0 51 0.00 51 65 0 47 0.00 47 66 0 49 0.00 49 67 0 40 0.00 40 68 0 49 0.00 49 69 0 47 0.00 47 70 0 49 0.00 49 71 0 37 0.00 37 72 0 43 0.00 43 73 0 42 0.00 42 74 1 43 2.27 44 75 1 37 2.63 38 76 0 47 0.00 47 77 2 55 3.51 57 78 0 63 0.00 63 79 1 49 2.00 50 80 2 38 5.00 40 81 0 30 0.00 30 82 0 37 0.00 37 83 0 43 0.00 43 84 0 38 0.00 38 85 2 42 4.55 44 86 1 24 4.00 25 87 0 27 0.00 27 88 0 33 0.00 33 89 0 38 0.00 38 90 0 35 0.00 35 91 0 38 0.00 38 92 0 28 0.00 28 93 0 25 0.00 25 94 0 27 0.00 27 95 0 29 0.00 29 96 0 23 0.00 23 97 0 25 0.00 25 98 0 28 0.00 28 99 0 22 0.00 22 100 0 15 0.00 15 101 1 29 3.33 30 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 14 22.22 18 2 3 25 10.71 28 3 6 19 24.00 25 4 1 22 4.35 23 5 0 29 0.00 29 6 1 16 5.88 17 7 0 14 0.00 14 8 0 20 0.00 20 9 0 19 0.00 19 10 1 17 5.56 18 11 0 13 0.00 13 12 0 14 0.00 14 13 0 15 0.00 15 14 0 12 0.00 12 15 0 12 0.00 12 16 1 14 6.67 15 17 0 21 0.00 21 18 0 17 0.00 17 19 0 13 0.00 13 20 0 21 0.00 21 21 0 16 0.00 16 22 0 12 0.00 12 23 0 13 0.00 13 24 0 16 0.00 16 25 1 18 5.26 19 26 0 19 0.00 19 27 0 14 0.00 14 28 0 9 0.00 9 29 0 18 0.00 18 30 0 7 0.00 7 31 0 10 0.00 10 32 0 21 0.00 21 33 0 14 0.00 14 34 0 11 0.00 11 35 0 9 0.00 9 36 0 11 0.00 11 37 0 21 0.00 21 38 0 12 0.00 12 39 0 10 0.00 10 40 0 8 0.00 8 41 0 16 0.00 16 42 0 13 0.00 13 43 0 4 0.00 4 44 0 12 0.00 12 45 0 9 0.00 9 46 0 9 0.00 9 47 0 13 0.00 13 48 0 10 0.00 10 49 1 15 6.25 16 50 1 7 12.50 8 51 0 8 0.00 8 52 0 11 0.00 11 53 0 5 0.00 5 54 1 7 12.50 8 55 0 4 0.00 4 56 0 8 0.00 8 57 0 5 0.00 5 58 0 9 0.00 9 59 1 13 7.14 14 60 0 7 0.00 7 61 0 4 0.00 4 62 0 13 0.00 13 63 0 8 0.00 8 64 0 11 0.00 11 65 0 9 0.00 9 66 0 5 0.00 5 67 0 12 0.00 12 68 0 4 0.00 4 69 0 9 0.00 9 70 0 1 0.00 1 71 0 3 0.00 3 72 0 6 0.00 6 73 0 3 0.00 3 74 0 6 0.00 6 75 0 3 0.00 3 76 0 7 0.00 7 77 0 6 0.00 6 78 0 2 0.00 2 79 1 7 12.50 8 80 0 4 0.00 4 81 0 3 0.00 3 82 0 5 0.00 5 83 0 5 0.00 5 84 0 6 0.00 6 85 1 4 20.00 5 86 0 7 0.00 7 87 0 3 0.00 3 88 0 2 0.00 2 89 0 4 0.00 4 90 0 2 0.00 2 91 0 2 0.00 2 92 0 5 0.00 5 93 0 3 0.00 3 94 0 3 0.00 3 95 0 2 0.00 2 96 0 3 0.00 3 97 0 5 0.00 5 98 0 5 0.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 14 12.50 16 2 2 19 9.52 21 3 3 21 12.50 24 4 2 7 22.22 9 5 0 35 0.00 35 6 0 24 0.00 24 7 0 11 0.00 11 8 1 14 6.67 15 9 1 16 5.88 17 10 1 19 5.00 20 11 0 11 0.00 11 12 0 23 0.00 23 13 0 15 0.00 15 14 0 21 0.00 21 15 0 22 0.00 22 16 0 12 0.00 12 17 0 16 0.00 16 18 0 16 0.00 16 19 0 13 0.00 13 20 0 13 0.00 13 21 0 10 0.00 10 22 0 11 0.00 11 23 0 10 0.00 10 24 0 10 0.00 10 25 0 16 0.00 16 26 0 11 0.00 11 27 0 15 0.00 15 28 0 7 0.00 7 29 1 19 5.00 20 30 0 14 0.00 14 31 0 9 0.00 9 32 1 14 6.67 15 33 0 19 0.00 19 34 0 10 0.00 10 35 0 5 0.00 5 36 0 6 0.00 6 37 0 12 0.00 12 38 0 17 0.00 17 39 0 7 0.00 7 40 0 9 0.00 9 41 0 7 0.00 7 42 0 9 0.00 9 43 0 9 0.00 9 44 0 7 0.00 7 45 0 9 0.00 9 46 0 10 0.00 10 47 1 13 7.14 14 48 0 9 0.00 9 49 0 11 0.00 11 50 0 5 0.00 5 51 1 13 7.14 14 52 0 8 0.00 8 53 0 10 0.00 10 54 0 10 0.00 10 55 0 11 0.00 11 56 0 5 0.00 5 57 0 6 0.00 6 58 0 4 0.00 4 59 0 12 0.00 12 60 0 8 0.00 8 61 0 13 0.00 13 62 0 2 0.00 2 63 0 10 0.00 10 64 0 8 0.00 8 65 0 7 0.00 7 66 0 6 0.00 6 67 1 4 20.00 5 68 2 11 15.38 13 69 0 7 0.00 7 70 0 11 0.00 11 71 0 7 0.00 7 72 0 9 0.00 9 73 0 4 0.00 4 74 1 6 14.29 7 75 0 11 0.00 11 76 0 3 0.00 3 77 0 4 0.00 4 78 0 4 0.00 4 79 0 7 0.00 7 80 0 8 0.00 8 81 0 2 0.00 2 82 0 6 0.00 6 83 0 10 0.00 10 84 0 4 0.00 4 85 0 11 0.00 11 86 0 9 0.00 9 87 0 3 0.00 3 88 0 4 0.00 4 89 0 8 0.00 8 90 0 2 0.00 2 91 0 4 0.00 4 92 0 2 0.00 2 93 0 9 0.00 9 94 0 5 0.00 5 95 0 3 0.00 3 96 0 5 0.00 5 97 0 7 0.00 7 98 0 6 0.00 6 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 14 22.22 18 2 3 9 25.00 12 3 1 3 25.00 4 4 0 10 0.00 10 5 1 12 7.69 13 6 1 20 4.76 21 7 0 32 0.00 32 8 0 36 0.00 36 9 0 39 0.00 39 10 0 41 0.00 41 11 0 36 0.00 36 12 0 37 0.00 37 13 1 37 2.63 38 14 1 25 3.85 26 15 0 39 0.00 39 16 0 33 0.00 33 17 1 33 2.94 34 18 0 24 0.00 24 19 0 28 0.00 28 20 0 23 0.00 23 21 0 20 0.00 20 22 0 23 0.00 23 23 0 25 0.00 25 24 0 12 0.00 12 25 0 15 0.00 15 26 0 26 0.00 26 27 0 21 0.00 21 28 0 31 0.00 31 29 0 24 0.00 24 30 0 15 0.00 15 31 0 17 0.00 17 32 1 15 6.25 16 33 0 26 0.00 26 34 0 27 0.00 27 35 0 23 0.00 23 36 0 25 0.00 25 37 0 16 0.00 16 38 0 17 0.00 17 39 0 22 0.00 22 40 0 17 0.00 17 41 0 20 0.00 20 42 0 15 0.00 15 43 0 11 0.00 11 44 0 21 0.00 21 45 0 16 0.00 16 46 0 21 0.00 21 47 0 17 0.00 17 48 1 13 7.14 14 49 0 17 0.00 17 50 0 12 0.00 12 51 0 18 0.00 18 52 0 11 0.00 11 53 0 12 0.00 12 54 0 24 0.00 24 55 0 22 0.00 22 56 0 17 0.00 17 57 0 16 0.00 16 58 0 10 0.00 10 59 0 17 0.00 17 60 0 14 0.00 14 61 0 15 0.00 15 62 0 9 0.00 9 63 0 11 0.00 11 64 0 15 0.00 15 65 1 6 14.29 7 66 0 8 0.00 8 67 0 12 0.00 12 68 0 8 0.00 8 69 0 13 0.00 13 70 0 9 0.00 9 71 0 14 0.00 14 72 0 12 0.00 12 73 0 13 0.00 13 74 0 12 0.00 12 75 0 10 0.00 10 76 0 11 0.00 11 77 0 15 0.00 15 78 0 6 0.00 6 79 0 9 0.00 9 80 0 9 0.00 9 81 0 13 0.00 13 82 0 10 0.00 10 83 0 14 0.00 14 84 0 5 0.00 5 85 0 10 0.00 10 86 0 10 0.00 10 87 0 12 0.00 12 88 0 5 0.00 5 89 0 4 0.00 4 90 0 14 0.00 14 91 0 6 0.00 6 92 0 9 0.00 9 93 0 8 0.00 8 94 1 9 10.00 10 95 0 8 0.00 8 96 0 6 0.00 6 97 0 9 0.00 9 98 0 8 0.00 8