/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-214_S30_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
624
Pairs without alignments under any condition
99376
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
24470
Methylated C's in CpG context
77
Methylated C's in CHG context
243
Methylated C's in CHH context
99
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
6942
Unmethylated C's in CHG context
6758
Unmethylated C's in CHH context
10351
Unmethylated C's in Unknown context
9
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
423
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
201
original bottom strand
Deduplication
Alignments analysed
624
Unique alignments
561
Duplicates removed
63
Duplicated alignments were found at 38 different positions
