CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 59 4.84 62 2 4 75 5.06 79 3 2 72 2.70 74 4 1 43 2.27 44 5 1 48 2.04 49 6 0 24 0.00 24 7 0 38 0.00 38 8 0 38 0.00 38 9 1 30 3.23 31 10 1 36 2.70 37 11 0 32 0.00 32 12 1 35 2.78 36 13 0 28 0.00 28 14 0 38 0.00 38 15 0 37 0.00 37 16 1 39 2.50 40 17 1 51 1.92 52 18 0 29 0.00 29 19 0 36 0.00 36 20 0 48 0.00 48 21 0 44 0.00 44 22 2 40 4.76 42 23 0 42 0.00 42 24 0 34 0.00 34 25 1 40 2.44 41 26 1 37 2.63 38 27 0 35 0.00 35 28 0 31 0.00 31 29 0 36 0.00 36 30 0 28 0.00 28 31 0 28 0.00 28 32 0 38 0.00 38 33 0 36 0.00 36 34 0 31 0.00 31 35 0 35 0.00 35 36 0 43 0.00 43 37 0 41 0.00 41 38 0 34 0.00 34 39 0 39 0.00 39 40 0 41 0.00 41 41 0 28 0.00 28 42 0 34 0.00 34 43 1 26 3.70 27 44 0 31 0.00 31 45 0 37 0.00 37 46 0 39 0.00 39 47 0 39 0.00 39 48 0 30 0.00 30 49 0 41 0.00 41 50 0 44 0.00 44 51 0 47 0.00 47 52 0 42 0.00 42 53 0 37 0.00 37 54 1 33 2.94 34 55 1 37 2.63 38 56 0 36 0.00 36 57 1 34 2.86 35 58 0 44 0.00 44 59 0 46 0.00 46 60 1 41 2.38 42 61 0 29 0.00 29 62 2 27 6.90 29 63 0 41 0.00 41 64 0 24 0.00 24 65 0 33 0.00 33 66 1 30 3.23 31 67 1 31 3.12 32 68 0 24 0.00 24 69 1 34 2.86 35 70 0 23 0.00 23 71 1 27 3.57 28 72 1 27 3.57 28 73 0 30 0.00 30 74 1 23 4.17 24 75 1 32 3.03 33 76 0 41 0.00 41 77 0 15 0.00 15 78 1 29 3.33 30 79 0 21 0.00 21 80 2 25 7.41 27 81 1 41 2.38 42 82 1 28 3.45 29 83 0 22 0.00 22 84 0 29 0.00 29 85 0 25 0.00 25 86 0 24 0.00 24 87 0 23 0.00 23 88 0 19 0.00 19 89 1 19 5.00 20 90 0 25 0.00 25 91 0 28 0.00 28 92 0 19 0.00 19 93 0 20 0.00 20 94 0 20 0.00 20 95 1 19 5.00 20 96 1 18 5.26 19 97 0 19 0.00 19 98 0 22 0.00 22 99 0 19 0.00 19 100 0 21 0.00 21 101 0 15 0.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 41 28 59.42 69 2 24 22 52.17 46 3 7 29 19.44 36 4 6 33 15.38 39 5 1 34 2.86 35 6 4 15 21.05 19 7 2 40 4.76 42 8 2 39 4.88 41 9 2 32 5.88 34 10 0 41 0.00 41 11 3 40 6.98 43 12 0 29 0.00 29 13 0 32 0.00 32 14 0 35 0.00 35 15 1 39 2.50 40 16 0 40 0.00 40 17 1 38 2.56 39 18 1 34 2.86 35 19 0 32 0.00 32 20 1 31 3.12 32 21 0 44 0.00 44 22 0 30 0.00 30 23 0 37 0.00 37 24 2 34 5.56 36 25 1 40 2.44 41 26 0 30 0.00 30 27 1 43 2.27 44 28 2 45 4.26 47 29 1 52 1.89 53 30 4 33 10.81 37 31 1 38 2.56 39 32 0 47 0.00 47 33 0 35 0.00 35 34 1 39 2.50 40 35 1 38 2.56 39 36 0 49 0.00 49 37 0 35 0.00 35 38 0 44 0.00 44 39 0 38 0.00 38 40 0 40 0.00 40 41 0 41 0.00 41 42 0 38 0.00 38 43 0 32 0.00 32 44 1 41 2.38 42 45 2 30 6.25 32 46 0 39 0.00 39 47 0 27 0.00 27 48 0 31 0.00 31 49 0 29 0.00 29 50 0 31 0.00 31 51 0 23 0.00 23 52 0 43 0.00 43 53 0 32 0.00 32 54 4 38 9.52 42 55 0 37 0.00 37 56 1 30 3.23 31 57 0 44 0.00 44 58 0 28 0.00 28 59 0 41 0.00 41 60 0 29 0.00 29 61 2 33 5.71 35 62 0 42 0.00 42 63 1 32 3.03 33 64 0 40 0.00 40 65 1 28 3.45 29 66 0 31 0.00 31 67 0 42 0.00 42 68 0 32 0.00 32 69 1 34 2.86 35 70 3 40 6.98 43 71 1 29 3.33 30 72 0 31 0.00 31 73 1 23 4.17 24 74 0 23 0.00 23 75 0 28 0.00 28 76 1 20 4.76 21 77 0 22 0.00 22 78 0 21 0.00 21 79 1 24 4.00 25 80 0 23 0.00 23 81 1 30 3.23 31 82 1 29 3.33 30 83 1 24 4.00 25 84 1 25 3.85 26 85 0 24 0.00 24 86 0 21 0.00 21 87 0 27 0.00 27 88 1 26 3.70 27 89 0 26 0.00 26 90 2 15 11.76 17 91 3 17 15.00 20 92 1 10 9.09 11 93 1 16 5.88 17 94 1 20 4.76 21 95 0 18 0.00 18 96 1 19 5.00 20 97 1 17 5.56 18 98 1 11 8.33 12 99 0 17 0.00 17 100 0 15 0.00 15 101 2 15 11.76 17 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 9 43.75 16 2 2 16 11.11 18 3 2 33 5.71 35 4 1 26 3.70 27 5 2 51 3.77 53 6 2 43 4.44 45 7 0 57 0.00 57 8 0 53 0.00 53 9 0 49 0.00 49 10 0 36 0.00 36 11 1 59 1.67 60 12 0 51 0.00 51 13 0 52 0.00 52 14 1 62 1.59 63 15 0 56 0.00 56 16 0 67 0.00 67 17 0 66 0.00 66 18 0 60 0.00 60 19 0 73 0.00 73 20 0 52 0.00 52 21 0 52 0.00 52 22 0 63 0.00 63 23 0 53 0.00 53 24 0 56 0.00 56 25 0 54 0.00 54 26 1 65 1.52 66 27 0 74 0.00 74 28 1 66 1.49 67 29 0 63 0.00 63 30 1 57 1.72 58 31 0 65 0.00 65 32 0 76 0.00 76 33 1 60 1.64 61 34 1 62 1.59 63 35 0 51 0.00 51 36 0 44 0.00 44 37 0 42 0.00 42 38 0 58 0.00 58 39 0 49 0.00 49 40 0 46 0.00 46 41 1 50 1.96 51 42 0 57 0.00 57 43 0 59 0.00 59 44 0 61 0.00 61 45 0 65 0.00 65 46 0 65 0.00 65 47 0 63 0.00 63 48 0 61 0.00 61 49 0 52 0.00 52 50 0 61 0.00 61 51 0 56 0.00 56 52 0 56 0.00 56 53 0 67 0.00 67 54 0 44 0.00 44 55 0 48 0.00 48 56 0 65 0.00 65 57 0 45 0.00 45 58 0 54 0.00 54 59 0 49 0.00 49 60 0 56 0.00 56 61 1 44 2.22 45 62 0 44 0.00 44 63 1 47 2.08 48 64 0 38 0.00 38 65 0 51 0.00 51 66 0 54 0.00 54 67 1 50 1.96 51 68 0 38 0.00 38 69 0 41 0.00 41 70 1 44 2.22 45 71 0 48 0.00 48 72 0 47 0.00 47 73 0 38 0.00 38 74 0 38 0.00 38 75 0 32 0.00 32 76 0 35 0.00 35 77 0 39 0.00 39 78 1 46 2.13 47 79 0 39 0.00 39 80 0 39 0.00 39 81 0 26 0.00 26 82 1 30 3.23 31 83 0 26 0.00 26 84 0 28 0.00 28 85 0 31 0.00 31 86 0 31 0.00 31 87 0 30 0.00 30 88 0 19 0.00 19 89 0 24 0.00 24 90 0 33 0.00 33 91 0 23 0.00 23 92 0 32 0.00 32 93 0 28 0.00 28 94 1 36 2.70 37 95 1 21 4.55 22 96 0 29 0.00 29 97 0 23 0.00 23 98 0 23 0.00 23 99 0 20 0.00 20 100 1 22 4.35 23 101 0 37 0.00 37 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 15 16.67 18 2 4 22 15.38 26 3 2 19 9.52 21 4 3 21 12.50 24 5 0 28 0.00 28 6 0 17 0.00 17 7 0 16 0.00 16 8 0 8 0.00 8 9 0 16 0.00 16 10 1 11 8.33 12 11 0 20 0.00 20 12 0 18 0.00 18 13 0 11 0.00 11 14 0 12 0.00 12 15 0 12 0.00 12 16 0 14 0.00 14 17 0 11 0.00 11 18 0 17 0.00 17 19 0 14 0.00 14 20 0 22 0.00 22 21 0 16 0.00 16 22 0 11 0.00 11 23 0 13 0.00 13 24 0 11 0.00 11 25 0 12 0.00 12 26 0 17 0.00 17 27 0 13 0.00 13 28 0 11 0.00 11 29 0 8 0.00 8 30 0 9 0.00 9 31 0 10 0.00 10 32 0 14 0.00 14 33 0 8 0.00 8 34 0 6 0.00 6 35 0 10 0.00 10 36 0 9 0.00 9 37 0 12 0.00 12 38 0 6 0.00 6 39 0 11 0.00 11 40 0 7 0.00 7 41 0 6 0.00 6 42 0 9 0.00 9 43 0 14 0.00 14 44 0 14 0.00 14 45 0 4 0.00 4 46 0 5 0.00 5 47 0 8 0.00 8 48 0 7 0.00 7 49 0 3 0.00 3 50 0 10 0.00 10 51 0 5 0.00 5 52 0 7 0.00 7 53 0 3 0.00 3 54 0 6 0.00 6 55 0 3 0.00 3 56 0 8 0.00 8 57 0 2 0.00 2 58 0 6 0.00 6 59 0 8 0.00 8 60 0 3 0.00 3 61 0 6 0.00 6 62 0 6 0.00 6 63 0 7 0.00 7 64 0 7 0.00 7 65 0 6 0.00 6 66 0 7 0.00 7 67 0 9 0.00 9 68 0 4 0.00 4 69 0 5 0.00 5 70 0 4 0.00 4 71 0 5 0.00 5 72 0 2 0.00 2 73 0 2 0.00 2 74 0 8 0.00 8 75 0 3 0.00 3 76 0 5 0.00 5 77 0 3 0.00 3 78 0 5 0.00 5 79 0 7 0.00 7 80 0 10 0.00 10 81 0 2 0.00 2 82 0 4 0.00 4 83 0 2 0.00 2 84 0 4 0.00 4 85 0 6 0.00 6 86 0 2 0.00 2 87 0 2 0.00 2 88 0 2 0.00 2 89 0 4 0.00 4 90 0 6 0.00 6 91 0 1 0.00 1 92 0 5 0.00 5 93 0 2 0.00 2 94 0 5 0.00 5 95 0 4 0.00 4 96 0 2 0.00 2 97 0 5 0.00 5 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 10 9.09 11 2 1 8 11.11 9 3 6 19 24.00 25 4 5 16 23.81 21 5 0 23 0.00 23 6 0 16 0.00 16 7 0 10 0.00 10 8 0 19 0.00 19 9 1 15 6.25 16 10 0 19 0.00 19 11 0 13 0.00 13 12 0 16 0.00 16 13 0 16 0.00 16 14 0 12 0.00 12 15 0 14 0.00 14 16 0 20 0.00 20 17 1 20 4.76 21 18 0 16 0.00 16 19 0 12 0.00 12 20 0 8 0.00 8 21 0 11 0.00 11 22 0 18 0.00 18 23 1 12 7.69 13 24 1 8 11.11 9 25 0 9 0.00 9 26 3 11 21.43 14 27 0 15 0.00 15 28 1 13 7.14 14 29 0 17 0.00 17 30 0 9 0.00 9 31 0 8 0.00 8 32 0 8 0.00 8 33 0 19 0.00 19 34 0 8 0.00 8 35 0 7 0.00 7 36 0 13 0.00 13 37 0 13 0.00 13 38 0 12 0.00 12 39 0 7 0.00 7 40 0 12 0.00 12 41 1 7 12.50 8 42 0 6 0.00 6 43 0 7 0.00 7 44 0 7 0.00 7 45 0 10 0.00 10 46 0 8 0.00 8 47 0 10 0.00 10 48 0 10 0.00 10 49 0 5 0.00 5 50 0 7 0.00 7 51 0 8 0.00 8 52 0 8 0.00 8 53 0 5 0.00 5 54 0 11 0.00 11 55 1 9 10.00 10 56 0 10 0.00 10 57 1 4 20.00 5 58 0 6 0.00 6 59 0 7 0.00 7 60 0 8 0.00 8 61 0 7 0.00 7 62 0 3 0.00 3 63 0 6 0.00 6 64 0 8 0.00 8 65 1 5 16.67 6 66 1 4 20.00 5 67 0 5 0.00 5 68 1 6 14.29 7 69 0 10 0.00 10 70 0 2 0.00 2 71 0 8 0.00 8 72 0 3 0.00 3 73 0 8 0.00 8 74 0 9 0.00 9 75 0 4 0.00 4 76 0 1 0.00 1 77 0 6 0.00 6 78 0 6 0.00 6 79 0 2 0.00 2 80 0 4 0.00 4 81 0 3 0.00 3 82 0 1 0.00 1 83 0 2 0.00 2 84 0 5 0.00 5 85 0 6 0.00 6 86 0 3 0.00 3 87 0 6 0.00 6 88 0 4 0.00 4 89 0 1 0.00 1 90 0 4 0.00 4 91 0 6 0.00 6 92 0 1 0.00 1 93 0 3 0.00 3 94 0 3 0.00 3 95 0 1 0.00 1 96 0 3 0.00 3 97 0 0 0 98 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 17 5.56 18 2 1 10 9.09 11 3 3 6 33.33 9 4 0 7 0.00 7 5 0 16 0.00 16 6 0 16 0.00 16 7 0 21 0.00 21 8 0 29 0.00 29 9 1 26 3.70 27 10 0 34 0.00 34 11 0 32 0.00 32 12 0 26 0.00 26 13 0 36 0.00 36 14 0 36 0.00 36 15 0 32 0.00 32 16 0 26 0.00 26 17 0 26 0.00 26 18 0 26 0.00 26 19 0 24 0.00 24 20 0 14 0.00 14 21 0 16 0.00 16 22 0 18 0.00 18 23 0 18 0.00 18 24 0 22 0.00 22 25 0 18 0.00 18 26 0 21 0.00 21 27 1 13 7.14 14 28 0 28 0.00 28 29 1 20 4.76 21 30 0 20 0.00 20 31 0 19 0.00 19 32 0 24 0.00 24 33 0 28 0.00 28 34 0 35 0.00 35 35 0 16 0.00 16 36 0 17 0.00 17 37 0 20 0.00 20 38 0 14 0.00 14 39 0 23 0.00 23 40 1 16 5.88 17 41 0 16 0.00 16 42 0 12 0.00 12 43 0 17 0.00 17 44 0 17 0.00 17 45 1 14 6.67 15 46 1 16 5.88 17 47 0 11 0.00 11 48 0 12 0.00 12 49 0 14 0.00 14 50 0 16 0.00 16 51 0 20 0.00 20 52 0 15 0.00 15 53 0 14 0.00 14 54 0 13 0.00 13 55 0 23 0.00 23 56 0 12 0.00 12 57 0 7 0.00 7 58 0 11 0.00 11 59 0 9 0.00 9 60 0 14 0.00 14 61 0 10 0.00 10 62 0 7 0.00 7 63 0 9 0.00 9 64 0 14 0.00 14 65 0 13 0.00 13 66 0 8 0.00 8 67 1 10 9.09 11 68 0 6 0.00 6 69 0 13 0.00 13 70 0 14 0.00 14 71 0 7 0.00 7 72 0 9 0.00 9 73 0 6 0.00 6 74 0 12 0.00 12 75 0 6 0.00 6 76 0 8 0.00 8 77 0 6 0.00 6 78 0 7 0.00 7 79 0 12 0.00 12 80 0 12 0.00 12 81 0 7 0.00 7 82 1 8 11.11 9 83 0 8 0.00 8 84 0 7 0.00 7 85 0 9 0.00 9 86 0 6 0.00 6 87 0 9 0.00 9 88 0 8 0.00 8 89 0 6 0.00 6 90 0 3 0.00 3 91 0 6 0.00 6 92 0 11 0.00 11 93 0 6 0.00 6 94 0 11 0.00 11 95 0 5 0.00 5 96 0 7 0.00 7 97 0 4 0.00 4 98 0 10 0.00 10