/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-209_S29_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
640
Pairs without alignments under any condition
99360
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
24643
Methylated C's in CpG context
93
Methylated C's in CHG context
308
Methylated C's in CHH context
71
Methylated C's in Unknown context
4
Unmethylated C's in CpG context
7101
Unmethylated C's in CHG context
6882
Unmethylated C's in CHH context
10188
Unmethylated C's in Unknown context
0
Percentage methylation (CpG context)
1.3%
Percentage methylation (CHG context)
4.3%
Percentage methylation (CHH context)
0.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
456
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
184
original bottom strand
Deduplication
Alignments analysed
640
Unique alignments
590
Duplicates removed
50
Duplicated alignments were found at 43 different positions
