EPI-208_S28_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 949 lines in total Total number of methylation call strings processed: 1898 Final Cytosine Methylation Report ================================= Total number of C's analysed: 19603 Total methylated C's in CpG context: 90 Total methylated C's in CHG context: 260 Total methylated C's in CHH context: 107 Total C to T conversions in CpG context: 5645 Total C to T conversions in CHG context: 5406 Total C to T conversions in CHH context: 8095 C methylated in CpG context: 1.6% C methylated in CHG context: 4.6% C methylated in CHH context: 1.3%