CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 106 6.19 113 2 4 145 2.68 149 3 2 128 1.54 130 4 0 67 0.00 67 5 0 66 0.00 66 6 0 47 0.00 47 7 1 53 1.85 54 8 0 54 0.00 54 9 1 59 1.67 60 10 1 64 1.54 65 11 0 59 0.00 59 12 0 51 0.00 51 13 0 48 0.00 48 14 0 44 0.00 44 15 0 51 0.00 51 16 0 49 0.00 49 17 1 60 1.64 61 18 0 66 0.00 66 19 3 60 4.76 63 20 2 76 2.56 78 21 1 80 1.23 81 22 1 55 1.79 56 23 1 59 1.67 60 24 0 61 0.00 61 25 0 44 0.00 44 26 0 52 0.00 52 27 0 74 0.00 74 28 1 61 1.61 62 29 1 55 1.79 56 30 2 52 3.70 54 31 1 64 1.54 65 32 0 61 0.00 61 33 1 50 1.96 51 34 1 47 2.08 48 35 1 64 1.54 65 36 0 65 0.00 65 37 2 66 2.94 68 38 2 54 3.57 56 39 1 74 1.33 75 40 1 49 2.00 50 41 0 46 0.00 46 42 0 51 0.00 51 43 0 48 0.00 48 44 0 39 0.00 39 45 0 43 0.00 43 46 0 40 0.00 40 47 0 65 0.00 65 48 0 56 0.00 56 49 1 48 2.04 49 50 1 55 1.79 56 51 0 51 0.00 51 52 0 59 0.00 59 53 0 47 0.00 47 54 0 39 0.00 39 55 0 49 0.00 49 56 2 40 4.76 42 57 2 47 4.08 49 58 0 51 0.00 51 59 0 63 0.00 63 60 1 51 1.92 52 61 0 46 0.00 46 62 0 46 0.00 46 63 1 37 2.63 38 64 1 30 3.23 31 65 0 45 0.00 45 66 0 36 0.00 36 67 0 36 0.00 36 68 1 33 2.94 34 69 1 31 3.12 32 70 0 35 0.00 35 71 0 34 0.00 34 72 1 28 3.45 29 73 0 28 0.00 28 74 2 40 4.76 42 75 0 43 0.00 43 76 1 34 2.86 35 77 1 35 2.78 36 78 0 43 0.00 43 79 0 22 0.00 22 80 0 31 0.00 31 81 1 46 2.13 47 82 2 23 8.00 25 83 1 31 3.12 32 84 0 21 0.00 21 85 0 29 0.00 29 86 1 24 4.00 25 87 0 25 0.00 25 88 0 22 0.00 22 89 1 18 5.26 19 90 1 34 2.86 35 91 1 27 3.57 28 92 1 23 4.17 24 93 0 19 0.00 19 94 0 30 0.00 30 95 1 20 4.76 21 96 0 9 0.00 9 97 0 19 0.00 19 98 1 21 4.55 22 99 0 18 0.00 18 100 1 22 4.35 23 101 1 19 5.00 20 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 82 50 62.12 132 2 36 34 51.43 70 3 14 49 22.22 63 4 3 67 4.29 70 5 8 51 13.56 59 6 1 31 3.12 32 7 2 70 2.78 72 8 1 60 1.64 61 9 2 47 4.08 49 10 4 68 5.56 72 11 3 57 5.00 60 12 0 71 0.00 71 13 0 52 0.00 52 14 0 65 0.00 65 15 0 44 0.00 44 16 1 62 1.59 63 17 0 76 0.00 76 18 0 55 0.00 55 19 2 62 3.12 64 20 1 67 1.47 68 21 0 54 0.00 54 22 1 53 1.85 54 23 0 61 0.00 61 24 3 48 5.88 51 25 1 66 1.49 67 26 1 74 1.33 75 27 4 74 5.13 78 28 1 65 1.52 66 29 1 61 1.61 62 30 3 69 4.17 72 31 0 49 0.00 49 32 3 62 4.62 65 33 1 56 1.75 57 34 3 74 3.90 77 35 0 64 0.00 64 36 1 65 1.52 66 37 0 65 0.00 65 38 0 64 0.00 64 39 0 55 0.00 55 40 1 55 1.79 56 41 0 53 0.00 53 42 1 59 1.67 60 43 0 47 0.00 47 44 3 53 5.36 56 45 1 35 2.78 36 46 1 44 2.22 45 47 2 50 3.85 52 48 1 59 1.67 60 49 1 37 2.63 38 50 0 37 0.00 37 51 1 39 2.50 40 52 0 51 0.00 51 53 2 57 3.39 59 54 5 59 7.81 64 55 1 43 2.27 44 56 0 51 0.00 51 57 0 43 0.00 43 58 1 47 2.08 48 59 1 34 2.86 35 60 0 48 0.00 48 61 1 47 2.08 48 62 0 36 0.00 36 63 1 39 2.50 40 64 1 46 2.13 47 65 1 32 3.03 33 66 0 46 0.00 46 67 0 50 0.00 50 68 0 29 0.00 29 69 0 45 0.00 45 70 2 48 4.00 50 71 2 35 5.41 37 72 1 39 2.50 40 73 0 27 0.00 27 74 0 42 0.00 42 75 0 33 0.00 33 76 1 25 3.85 26 77 1 29 3.33 30 78 1 32 3.03 33 79 1 19 5.00 20 80 2 35 5.41 37 81 0 39 0.00 39 82 0 23 0.00 23 83 1 34 2.86 35 84 2 28 6.67 30 85 1 26 3.70 27 86 1 22 4.35 23 87 0 24 0.00 24 88 2 25 7.41 27 89 0 27 0.00 27 90 0 18 0.00 18 91 0 23 0.00 23 92 1 19 5.00 20 93 0 22 0.00 22 94 1 26 3.70 27 95 0 28 0.00 28 96 0 27 0.00 27 97 0 20 0.00 20 98 0 20 0.00 20 99 0 11 0.00 11 100 1 11 8.33 12 101 1 14 6.67 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 25 30.56 36 2 5 15 25.00 20 3 3 41 6.82 44 4 0 46 0.00 46 5 2 75 2.60 77 6 4 72 5.26 76 7 1 90 1.10 91 8 1 99 1.00 100 9 0 78 0.00 78 10 0 96 0.00 96 11 0 69 0.00 69 12 0 67 0.00 67 13 2 71 2.74 73 14 1 83 1.19 84 15 1 86 1.15 87 16 0 106 0.00 106 17 1 108 0.92 109 18 1 86 1.15 87 19 2 80 2.44 82 20 1 79 1.25 80 21 2 90 2.17 92 22 0 114 0.00 114 23 0 90 0.00 90 24 2 95 2.06 97 25 2 96 2.04 98 26 0 118 0.00 118 27 0 89 0.00 89 28 0 85 0.00 85 29 2 106 1.85 108 30 0 71 0.00 71 31 1 97 1.02 98 32 0 104 0.00 104 33 1 88 1.12 89 34 1 70 1.41 71 35 1 65 1.52 66 36 1 58 1.69 59 37 0 71 0.00 71 38 1 68 1.45 69 39 0 71 0.00 71 40 0 59 0.00 59 41 1 81 1.22 82 42 1 82 1.20 83 43 1 65 1.52 66 44 0 89 0.00 89 45 0 89 0.00 89 46 2 97 2.02 99 47 1 101 0.98 102 48 0 67 0.00 67 49 0 65 0.00 65 50 0 88 0.00 88 51 0 91 0.00 91 52 1 70 1.41 71 53 0 97 0.00 97 54 1 80 1.23 81 55 0 75 0.00 75 56 2 55 3.51 57 57 0 79 0.00 79 58 0 47 0.00 47 59 0 70 0.00 70 60 1 57 1.72 58 61 2 61 3.17 63 62 1 55 1.79 56 63 0 74 0.00 74 64 1 46 2.13 47 65 0 49 0.00 49 66 3 59 4.84 62 67 2 45 4.26 47 68 0 46 0.00 46 69 0 45 0.00 45 70 0 58 0.00 58 71 1 46 2.13 47 72 1 49 2.00 50 73 1 45 2.17 46 74 0 65 0.00 65 75 1 50 1.96 51 76 0 47 0.00 47 77 0 60 0.00 60 78 1 50 1.96 51 79 0 49 0.00 49 80 1 53 1.85 54 81 0 46 0.00 46 82 2 38 5.00 40 83 0 39 0.00 39 84 0 40 0.00 40 85 1 37 2.63 38 86 1 33 2.94 34 87 0 32 0.00 32 88 0 34 0.00 34 89 0 36 0.00 36 90 0 45 0.00 45 91 0 34 0.00 34 92 1 32 3.03 33 93 1 32 3.03 33 94 0 41 0.00 41 95 0 33 0.00 33 96 0 27 0.00 27 97 1 31 3.12 32 98 0 31 0.00 31 99 0 20 0.00 20 100 0 34 0.00 34 101 1 24 4.00 25 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 16 20.00 20 2 4 20 16.67 24 3 3 21 12.50 24 4 3 21 12.50 24 5 0 34 0.00 34 6 0 15 0.00 15 7 1 21 4.55 22 8 0 16 0.00 16 9 0 20 0.00 20 10 0 25 0.00 25 11 1 17 5.56 18 12 0 18 0.00 18 13 0 12 0.00 12 14 0 16 0.00 16 15 0 14 0.00 14 16 0 13 0.00 13 17 1 18 5.26 19 18 0 15 0.00 15 19 0 13 0.00 13 20 0 29 0.00 29 21 1 19 5.00 20 22 0 10 0.00 10 23 0 12 0.00 12 24 0 6 0.00 6 25 0 11 0.00 11 26 0 20 0.00 20 27 0 10 0.00 10 28 0 14 0.00 14 29 0 12 0.00 12 30 0 9 0.00 9 31 0 11 0.00 11 32 0 13 0.00 13 33 0 11 0.00 11 34 0 6 0.00 6 35 0 10 0.00 10 36 0 7 0.00 7 37 0 10 0.00 10 38 0 4 0.00 4 39 0 10 0.00 10 40 0 6 0.00 6 41 0 11 0.00 11 42 0 7 0.00 7 43 0 12 0.00 12 44 0 13 0.00 13 45 0 4 0.00 4 46 0 11 0.00 11 47 0 8 0.00 8 48 0 10 0.00 10 49 1 7 12.50 8 50 0 10 0.00 10 51 0 5 0.00 5 52 0 10 0.00 10 53 0 2 0.00 2 54 0 7 0.00 7 55 0 4 0.00 4 56 0 6 0.00 6 57 0 4 0.00 4 58 0 3 0.00 3 59 0 5 0.00 5 60 0 6 0.00 6 61 0 10 0.00 10 62 1 7 12.50 8 63 0 3 0.00 3 64 1 8 11.11 9 65 0 9 0.00 9 66 0 8 0.00 8 67 0 7 0.00 7 68 0 5 0.00 5 69 0 8 0.00 8 70 0 9 0.00 9 71 1 6 14.29 7 72 0 4 0.00 4 73 0 2 0.00 2 74 0 1 0.00 1 75 0 7 0.00 7 76 0 8 0.00 8 77 0 7 0.00 7 78 0 6 0.00 6 79 0 3 0.00 3 80 0 8 0.00 8 81 0 5 0.00 5 82 0 4 0.00 4 83 0 1 0.00 1 84 0 1 0.00 1 85 0 1 0.00 1 86 0 6 0.00 6 87 0 3 0.00 3 88 0 3 0.00 3 89 0 2 0.00 2 90 0 2 0.00 2 91 0 5 0.00 5 92 0 3 0.00 3 93 0 4 0.00 4 94 0 2 0.00 2 95 0 1 0.00 1 96 0 2 0.00 2 97 0 1 0.00 1 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 5 37.50 8 2 2 16 11.11 18 3 4 16 20.00 20 4 8 15 34.78 23 5 0 22 0.00 22 6 0 28 0.00 28 7 0 14 0.00 14 8 1 19 5.00 20 9 0 16 0.00 16 10 0 19 0.00 19 11 0 14 0.00 14 12 0 14 0.00 14 13 1 18 5.26 19 14 0 12 0.00 12 15 0 17 0.00 17 16 1 13 7.14 14 17 0 22 0.00 22 18 1 11 8.33 12 19 0 14 0.00 14 20 0 11 0.00 11 21 0 10 0.00 10 22 0 11 0.00 11 23 0 14 0.00 14 24 0 14 0.00 14 25 0 15 0.00 15 26 0 14 0.00 14 27 1 13 7.14 14 28 0 13 0.00 13 29 0 14 0.00 14 30 1 7 12.50 8 31 0 7 0.00 7 32 0 18 0.00 18 33 1 15 6.25 16 34 0 10 0.00 10 35 0 9 0.00 9 36 0 11 0.00 11 37 0 10 0.00 10 38 0 13 0.00 13 39 0 4 0.00 4 40 0 13 0.00 13 41 0 7 0.00 7 42 0 6 0.00 6 43 0 5 0.00 5 44 0 8 0.00 8 45 0 9 0.00 9 46 0 4 0.00 4 47 2 8 20.00 10 48 0 12 0.00 12 49 0 10 0.00 10 50 0 4 0.00 4 51 0 8 0.00 8 52 1 10 9.09 11 53 0 3 0.00 3 54 0 8 0.00 8 55 0 8 0.00 8 56 0 9 0.00 9 57 0 9 0.00 9 58 0 7 0.00 7 59 0 7 0.00 7 60 0 3 0.00 3 61 0 6 0.00 6 62 0 3 0.00 3 63 0 4 0.00 4 64 0 6 0.00 6 65 0 6 0.00 6 66 1 6 14.29 7 67 0 9 0.00 9 68 0 6 0.00 6 69 1 5 16.67 6 70 0 6 0.00 6 71 0 8 0.00 8 72 0 4 0.00 4 73 0 7 0.00 7 74 0 9 0.00 9 75 0 4 0.00 4 76 0 2 0.00 2 77 0 5 0.00 5 78 0 6 0.00 6 79 0 5 0.00 5 80 0 1 0.00 1 81 0 5 0.00 5 82 0 7 0.00 7 83 0 4 0.00 4 84 0 2 0.00 2 85 0 0 0 86 0 3 0.00 3 87 0 8 0.00 8 88 0 2 0.00 2 89 0 6 0.00 6 90 0 4 0.00 4 91 0 3 0.00 3 92 0 3 0.00 3 93 0 2 0.00 2 94 0 4 0.00 4 95 0 1 0.00 1 96 0 1 0.00 1 97 0 4 0.00 4 98 0 4 0.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 10 23.08 13 2 3 10 23.08 13 3 3 4 42.86 7 4 0 7 0.00 7 5 0 16 0.00 16 6 0 22 0.00 22 7 0 33 0.00 33 8 0 33 0.00 33 9 0 39 0.00 39 10 1 45 2.17 46 11 0 34 0.00 34 12 0 29 0.00 29 13 1 29 3.33 30 14 0 31 0.00 31 15 0 27 0.00 27 16 1 34 2.86 35 17 1 30 3.23 31 18 0 32 0.00 32 19 0 28 0.00 28 20 0 22 0.00 22 21 0 22 0.00 22 22 0 30 0.00 30 23 0 25 0.00 25 24 0 23 0.00 23 25 0 14 0.00 14 26 0 24 0.00 24 27 1 14 6.67 15 28 0 21 0.00 21 29 0 19 0.00 19 30 0 20 0.00 20 31 0 22 0.00 22 32 0 16 0.00 16 33 0 35 0.00 35 34 1 31 3.12 32 35 0 20 0.00 20 36 1 34 2.86 35 37 0 29 0.00 29 38 1 24 4.00 25 39 0 20 0.00 20 40 0 17 0.00 17 41 1 8 11.11 9 42 0 14 0.00 14 43 0 18 0.00 18 44 0 21 0.00 21 45 0 15 0.00 15 46 1 22 4.35 23 47 0 17 0.00 17 48 0 17 0.00 17 49 0 13 0.00 13 50 0 15 0.00 15 51 0 12 0.00 12 52 0 15 0.00 15 53 1 11 8.33 12 54 0 13 0.00 13 55 1 13 7.14 14 56 0 14 0.00 14 57 0 14 0.00 14 58 0 14 0.00 14 59 0 14 0.00 14 60 2 9 18.18 11 61 0 12 0.00 12 62 0 10 0.00 10 63 0 10 0.00 10 64 0 16 0.00 16 65 0 12 0.00 12 66 0 11 0.00 11 67 0 7 0.00 7 68 0 12 0.00 12 69 0 10 0.00 10 70 0 17 0.00 17 71 0 9 0.00 9 72 0 6 0.00 6 73 0 9 0.00 9 74 0 12 0.00 12 75 0 11 0.00 11 76 0 9 0.00 9 77 0 7 0.00 7 78 0 8 0.00 8 79 0 10 0.00 10 80 0 8 0.00 8 81 0 4 0.00 4 82 0 8 0.00 8 83 0 9 0.00 9 84 0 14 0.00 14 85 0 10 0.00 10 86 0 8 0.00 8 87 0 8 0.00 8 88 0 4 0.00 4 89 0 3 0.00 3 90 0 5 0.00 5 91 0 10 0.00 10 92 0 12 0.00 12 93 0 10 0.00 10 94 0 1 0.00 1 95 0 7 0.00 7 96 0 8 0.00 8 97 0 7 0.00 7 98 0 4 0.00 4