/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-208_S28_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
1086
Pairs without alignments under any condition
98914
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
36315
Methylated C's in CpG context
174
Methylated C's in CHG context
481
Methylated C's in CHH context
183
Methylated C's in Unknown context
1
Unmethylated C's in CpG context
10494
Unmethylated C's in CHG context
10189
Unmethylated C's in CHH context
14794
Unmethylated C's in Unknown context
3
Percentage methylation (CpG context)
1.6%
Percentage methylation (CHG context)
4.5%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
712
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
374
original bottom strand
Deduplication
Alignments analysed
1086
Unique alignments
949
Duplicates removed
137
Duplicated alignments were found at 80 different positions