CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 58 3.33 60 2 0 68 0.00 68 3 0 61 0.00 61 4 1 41 2.38 42 5 0 34 0.00 34 6 1 21 4.55 22 7 0 28 0.00 28 8 0 19 0.00 19 9 0 26 0.00 26 10 0 20 0.00 20 11 0 32 0.00 32 12 0 27 0.00 27 13 0 27 0.00 27 14 1 29 3.33 30 15 0 30 0.00 30 16 0 35 0.00 35 17 0 35 0.00 35 18 1 29 3.33 30 19 0 28 0.00 28 20 0 38 0.00 38 21 0 34 0.00 34 22 0 31 0.00 31 23 0 25 0.00 25 24 1 24 4.00 25 25 0 20 0.00 20 26 1 20 4.76 21 27 0 25 0.00 25 28 0 28 0.00 28 29 1 29 3.33 30 30 0 41 0.00 41 31 2 30 6.25 32 32 0 31 0.00 31 33 0 43 0.00 43 34 1 16 5.88 17 35 1 35 2.78 36 36 0 29 0.00 29 37 0 27 0.00 27 38 0 33 0.00 33 39 0 28 0.00 28 40 0 30 0.00 30 41 0 34 0.00 34 42 1 26 3.70 27 43 0 22 0.00 22 44 0 13 0.00 13 45 0 31 0.00 31 46 1 23 4.17 24 47 0 23 0.00 23 48 0 23 0.00 23 49 0 30 0.00 30 50 1 23 4.17 24 51 0 31 0.00 31 52 0 27 0.00 27 53 0 20 0.00 20 54 0 22 0.00 22 55 1 28 3.45 29 56 0 22 0.00 22 57 0 30 0.00 30 58 0 34 0.00 34 59 1 38 2.56 39 60 1 23 4.17 24 61 0 25 0.00 25 62 1 20 4.76 21 63 0 15 0.00 15 64 0 21 0.00 21 65 1 20 4.76 21 66 0 18 0.00 18 67 0 23 0.00 23 68 0 14 0.00 14 69 0 16 0.00 16 70 0 18 0.00 18 71 0 14 0.00 14 72 2 13 13.33 15 73 1 22 4.35 23 74 0 17 0.00 17 75 0 18 0.00 18 76 1 17 5.56 18 77 0 16 0.00 16 78 1 16 5.88 17 79 0 22 0.00 22 80 1 16 5.88 17 81 0 18 0.00 18 82 0 22 0.00 22 83 0 21 0.00 21 84 0 12 0.00 12 85 0 16 0.00 16 86 0 17 0.00 17 87 0 15 0.00 15 88 0 6 0.00 6 89 1 14 6.67 15 90 0 18 0.00 18 91 0 18 0.00 18 92 0 8 0.00 8 93 0 11 0.00 11 94 1 13 7.14 14 95 0 17 0.00 17 96 0 11 0.00 11 97 0 10 0.00 10 98 0 10 0.00 10 99 0 8 0.00 8 100 0 8 0.00 8 101 0 9 0.00 9 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 27 21 56.25 48 2 23 9 71.88 32 3 8 21 27.59 29 4 3 24 11.11 27 5 3 23 11.54 26 6 1 16 5.88 17 7 3 27 10.00 30 8 0 36 0.00 36 9 0 22 0.00 22 10 1 32 3.03 33 11 0 35 0.00 35 12 0 26 0.00 26 13 0 29 0.00 29 14 0 32 0.00 32 15 1 28 3.45 29 16 3 26 10.34 29 17 1 27 3.57 28 18 0 25 0.00 25 19 0 26 0.00 26 20 0 35 0.00 35 21 1 26 3.70 27 22 0 27 0.00 27 23 0 27 0.00 27 24 0 29 0.00 29 25 0 33 0.00 33 26 0 35 0.00 35 27 0 25 0.00 25 28 0 37 0.00 37 29 0 37 0.00 37 30 1 36 2.70 37 31 0 18 0.00 18 32 0 38 0.00 38 33 0 33 0.00 33 34 0 34 0.00 34 35 0 39 0.00 39 36 2 36 5.26 38 37 0 29 0.00 29 38 1 30 3.23 31 39 0 31 0.00 31 40 0 28 0.00 28 41 0 32 0.00 32 42 0 26 0.00 26 43 0 19 0.00 19 44 0 28 0.00 28 45 1 20 4.76 21 46 1 20 4.76 21 47 0 24 0.00 24 48 1 23 4.17 24 49 0 39 0.00 39 50 0 23 0.00 23 51 1 13 7.14 14 52 0 22 0.00 22 53 0 29 0.00 29 54 0 39 0.00 39 55 0 26 0.00 26 56 0 20 0.00 20 57 0 32 0.00 32 58 0 29 0.00 29 59 0 28 0.00 28 60 1 23 4.17 24 61 0 24 0.00 24 62 1 18 5.26 19 63 0 21 0.00 21 64 0 25 0.00 25 65 1 21 4.55 22 66 1 24 4.00 25 67 0 25 0.00 25 68 0 14 0.00 14 69 0 23 0.00 23 70 1 27 3.57 28 71 0 12 0.00 12 72 0 16 0.00 16 73 0 16 0.00 16 74 0 12 0.00 12 75 0 20 0.00 20 76 1 21 4.55 22 77 0 8 0.00 8 78 0 15 0.00 15 79 0 17 0.00 17 80 1 20 4.76 21 81 0 17 0.00 17 82 2 16 11.11 18 83 0 15 0.00 15 84 0 14 0.00 14 85 1 10 9.09 11 86 0 13 0.00 13 87 0 10 0.00 10 88 0 15 0.00 15 89 0 14 0.00 14 90 0 14 0.00 14 91 0 11 0.00 11 92 0 15 0.00 15 93 0 10 0.00 10 94 0 7 0.00 7 95 0 19 0.00 19 96 0 10 0.00 10 97 0 11 0.00 11 98 0 5 0.00 5 99 1 2 33.33 3 100 1 8 11.11 9 101 2 13 13.33 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10 8 55.56 18 2 2 13 13.33 15 3 1 27 3.57 28 4 0 29 0.00 29 5 0 41 0.00 41 6 4 39 9.30 43 7 0 37 0.00 37 8 0 51 0.00 51 9 0 44 0.00 44 10 2 37 5.13 39 11 1 43 2.27 44 12 0 42 0.00 42 13 0 42 0.00 42 14 0 51 0.00 51 15 0 52 0.00 52 16 1 61 1.61 62 17 1 49 2.00 50 18 1 55 1.79 56 19 1 41 2.38 42 20 0 38 0.00 38 21 0 40 0.00 40 22 0 52 0.00 52 23 1 47 2.08 48 24 0 54 0.00 54 25 0 53 0.00 53 26 0 52 0.00 52 27 0 52 0.00 52 28 0 40 0.00 40 29 1 63 1.56 64 30 0 42 0.00 42 31 0 56 0.00 56 32 0 57 0.00 57 33 0 47 0.00 47 34 0 53 0.00 53 35 0 46 0.00 46 36 0 37 0.00 37 37 0 38 0.00 38 38 0 50 0.00 50 39 0 41 0.00 41 40 1 41 2.38 42 41 0 36 0.00 36 42 1 37 2.63 38 43 0 43 0.00 43 44 0 44 0.00 44 45 0 55 0.00 55 46 1 47 2.08 48 47 0 46 0.00 46 48 0 34 0.00 34 49 0 34 0.00 34 50 0 48 0.00 48 51 0 31 0.00 31 52 0 40 0.00 40 53 0 39 0.00 39 54 0 44 0.00 44 55 0 38 0.00 38 56 1 34 2.86 35 57 0 36 0.00 36 58 1 32 3.03 33 59 0 33 0.00 33 60 0 28 0.00 28 61 0 23 0.00 23 62 0 27 0.00 27 63 0 33 0.00 33 64 1 37 2.63 38 65 0 32 0.00 32 66 0 36 0.00 36 67 0 26 0.00 26 68 0 26 0.00 26 69 0 24 0.00 24 70 2 23 8.00 25 71 0 25 0.00 25 72 0 30 0.00 30 73 1 32 3.03 33 74 1 29 3.33 30 75 0 35 0.00 35 76 0 23 0.00 23 77 0 30 0.00 30 78 1 39 2.50 40 79 0 42 0.00 42 80 0 22 0.00 22 81 0 23 0.00 23 82 1 25 3.85 26 83 0 21 0.00 21 84 0 23 0.00 23 85 0 19 0.00 19 86 0 13 0.00 13 87 0 20 0.00 20 88 0 22 0.00 22 89 0 23 0.00 23 90 1 17 5.56 18 91 0 21 0.00 21 92 0 22 0.00 22 93 0 15 0.00 15 94 0 13 0.00 13 95 0 19 0.00 19 96 1 16 5.88 17 97 0 11 0.00 11 98 0 18 0.00 18 99 0 16 0.00 16 100 0 12 0.00 12 101 1 24 4.00 25 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 11 26.67 15 2 1 8 11.11 9 3 1 13 7.14 14 4 1 15 6.25 16 5 0 22 0.00 22 6 0 8 0.00 8 7 0 11 0.00 11 8 0 16 0.00 16 9 0 14 0.00 14 10 0 9 0.00 9 11 0 8 0.00 8 12 0 9 0.00 9 13 0 7 0.00 7 14 0 4 0.00 4 15 0 10 0.00 10 16 0 6 0.00 6 17 0 5 0.00 5 18 0 9 0.00 9 19 0 6 0.00 6 20 0 11 0.00 11 21 0 12 0.00 12 22 0 7 0.00 7 23 0 7 0.00 7 24 0 13 0.00 13 25 0 6 0.00 6 26 0 9 0.00 9 27 0 4 0.00 4 28 0 6 0.00 6 29 0 8 0.00 8 30 0 0 0 31 0 10 0.00 10 32 0 9 0.00 9 33 0 4 0.00 4 34 0 6 0.00 6 35 0 4 0.00 4 36 0 8 0.00 8 37 0 8 0.00 8 38 0 1 0.00 1 39 0 3 0.00 3 40 0 4 0.00 4 41 0 4 0.00 4 42 0 7 0.00 7 43 0 4 0.00 4 44 0 5 0.00 5 45 0 2 0.00 2 46 0 3 0.00 3 47 0 8 0.00 8 48 0 5 0.00 5 49 0 4 0.00 4 50 0 3 0.00 3 51 0 3 0.00 3 52 1 6 14.29 7 53 0 2 0.00 2 54 0 6 0.00 6 55 0 1 0.00 1 56 0 3 0.00 3 57 0 3 0.00 3 58 0 2 0.00 2 59 0 7 0.00 7 60 0 2 0.00 2 61 0 1 0.00 1 62 0 4 0.00 4 63 0 3 0.00 3 64 0 3 0.00 3 65 0 4 0.00 4 66 0 3 0.00 3 67 0 6 0.00 6 68 0 3 0.00 3 69 0 5 0.00 5 70 0 2 0.00 2 71 0 3 0.00 3 72 0 2 0.00 2 73 0 0 0 74 0 4 0.00 4 75 0 4 0.00 4 76 0 1 0.00 1 77 0 5 0.00 5 78 0 2 0.00 2 79 0 1 0.00 1 80 0 4 0.00 4 81 0 3 0.00 3 82 0 1 0.00 1 83 0 1 0.00 1 84 0 1 0.00 1 85 0 2 0.00 2 86 0 1 0.00 1 87 0 1 0.00 1 88 0 2 0.00 2 89 0 4 0.00 4 90 0 1 0.00 1 91 0 1 0.00 1 92 0 2 0.00 2 93 0 1 0.00 1 94 0 2 0.00 2 95 0 1 0.00 1 96 0 3 0.00 3 97 0 2 0.00 2 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 10 0.00 10 2 3 7 30.00 10 3 3 15 16.67 18 4 1 9 10.00 10 5 1 13 7.14 14 6 0 13 0.00 13 7 0 6 0.00 6 8 0 13 0.00 13 9 0 10 0.00 10 10 1 10 9.09 11 11 0 4 0.00 4 12 0 10 0.00 10 13 0 9 0.00 9 14 0 8 0.00 8 15 0 10 0.00 10 16 0 6 0.00 6 17 0 9 0.00 9 18 0 15 0.00 15 19 0 14 0.00 14 20 0 4 0.00 4 21 1 7 12.50 8 22 0 11 0.00 11 23 0 2 0.00 2 24 1 2 33.33 3 25 0 7 0.00 7 26 0 7 0.00 7 27 0 9 0.00 9 28 0 9 0.00 9 29 0 4 0.00 4 30 0 7 0.00 7 31 0 3 0.00 3 32 0 3 0.00 3 33 0 12 0.00 12 34 0 10 0.00 10 35 0 2 0.00 2 36 0 9 0.00 9 37 0 6 0.00 6 38 0 4 0.00 4 39 0 5 0.00 5 40 0 9 0.00 9 41 0 4 0.00 4 42 0 7 0.00 7 43 0 4 0.00 4 44 0 8 0.00 8 45 0 2 0.00 2 46 0 3 0.00 3 47 0 4 0.00 4 48 0 8 0.00 8 49 0 3 0.00 3 50 0 4 0.00 4 51 0 8 0.00 8 52 0 4 0.00 4 53 0 3 0.00 3 54 0 4 0.00 4 55 0 6 0.00 6 56 0 4 0.00 4 57 0 2 0.00 2 58 0 2 0.00 2 59 0 4 0.00 4 60 0 6 0.00 6 61 0 7 0.00 7 62 0 3 0.00 3 63 0 1 0.00 1 64 0 4 0.00 4 65 0 4 0.00 4 66 0 1 0.00 1 67 0 2 0.00 2 68 0 3 0.00 3 69 0 5 0.00 5 70 0 5 0.00 5 71 1 3 25.00 4 72 0 1 0.00 1 73 0 3 0.00 3 74 0 4 0.00 4 75 0 6 0.00 6 76 0 1 0.00 1 77 0 1 0.00 1 78 0 4 0.00 4 79 0 0 0 80 0 4 0.00 4 81 0 1 0.00 1 82 0 3 0.00 3 83 0 4 0.00 4 84 0 4 0.00 4 85 3 2 60.00 5 86 0 2 0.00 2 87 0 2 0.00 2 88 0 3 0.00 3 89 0 2 0.00 2 90 0 1 0.00 1 91 0 0 0 92 0 5 0.00 5 93 0 3 0.00 3 94 0 0 0 95 0 2 0.00 2 96 0 0 0 97 0 4 0.00 4 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 6 33.33 9 2 0 6 0.00 6 3 2 4 33.33 6 4 0 2 0.00 2 5 0 4 0.00 4 6 0 7 0.00 7 7 0 18 0.00 18 8 0 19 0.00 19 9 0 14 0.00 14 10 0 22 0.00 22 11 0 21 0.00 21 12 0 19 0.00 19 13 0 15 0.00 15 14 1 15 6.25 16 15 0 15 0.00 15 16 0 19 0.00 19 17 0 12 0.00 12 18 0 7 0.00 7 19 0 8 0.00 8 20 0 9 0.00 9 21 1 5 16.67 6 22 0 12 0.00 12 23 0 13 0.00 13 24 0 15 0.00 15 25 0 11 0.00 11 26 0 9 0.00 9 27 0 7 0.00 7 28 0 20 0.00 20 29 0 12 0.00 12 30 0 9 0.00 9 31 0 9 0.00 9 32 1 6 14.29 7 33 0 14 0.00 14 34 0 15 0.00 15 35 0 12 0.00 12 36 0 11 0.00 11 37 0 11 0.00 11 38 0 14 0.00 14 39 0 11 0.00 11 40 0 10 0.00 10 41 0 7 0.00 7 42 0 2 0.00 2 43 0 9 0.00 9 44 0 8 0.00 8 45 2 9 18.18 11 46 0 8 0.00 8 47 0 6 0.00 6 48 0 6 0.00 6 49 1 10 9.09 11 50 0 10 0.00 10 51 0 7 0.00 7 52 0 8 0.00 8 53 0 10 0.00 10 54 0 14 0.00 14 55 0 8 0.00 8 56 0 8 0.00 8 57 0 11 0.00 11 58 0 8 0.00 8 59 0 9 0.00 9 60 0 9 0.00 9 61 0 3 0.00 3 62 0 3 0.00 3 63 0 10 0.00 10 64 0 9 0.00 9 65 0 6 0.00 6 66 0 3 0.00 3 67 0 6 0.00 6 68 0 9 0.00 9 69 0 3 0.00 3 70 0 6 0.00 6 71 0 4 0.00 4 72 0 6 0.00 6 73 0 5 0.00 5 74 0 3 0.00 3 75 0 4 0.00 4 76 0 6 0.00 6 77 0 1 0.00 1 78 0 3 0.00 3 79 0 9 0.00 9 80 0 9 0.00 9 81 0 2 0.00 2 82 1 9 10.00 10 83 0 0 0 84 1 4 20.00 5 85 0 4 0.00 4 86 0 8 0.00 8 87 0 5 0.00 5 88 0 2 0.00 2 89 0 2 0.00 2 90 0 3 0.00 3 91 0 7 0.00 7 92 0 6 0.00 6 93 0 2 0.00 2 94 0 4 0.00 4 95 0 4 0.00 4 96 0 4 0.00 4 97 0 1 0.00 1 98 0 3 0.00 3