/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-206_S27_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
513
Pairs without alignments under any condition
99487
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
17988
Methylated C's in CpG context
68
Methylated C's in CHG context
201
Methylated C's in CHH context
83
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
5111
Unmethylated C's in CHG context
4998
Unmethylated C's in CHH context
7527
Unmethylated C's in Unknown context
13
Percentage methylation (CpG context)
1.3%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
1.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
346
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
167
original bottom strand
Deduplication
Alignments analysed
513
Unique alignments
473
Duplicates removed
40
Duplicated alignments were found at 29 different positions
