/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-205_S26_L004_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
505
Pairs without alignments under any condition
99495
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
17949
Methylated C's in CpG context
78
Methylated C's in CHG context
205
Methylated C's in CHH context
78
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
5146
Unmethylated C's in CHG context
4965
Unmethylated C's in CHH context
7477
Unmethylated C's in Unknown context
2
Percentage methylation (CpG context)
1.5%
Percentage methylation (CHG context)
4.0%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
332
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
173
original bottom strand
Deduplication
Alignments analysed
505
Unique alignments
467
Duplicates removed
38
Duplicated alignments were found at 29 different positions
