CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 57 3.39 59 2 2 58 3.33 60 3 1 52 1.89 53 4 0 24 0.00 24 5 2 27 6.90 29 6 0 18 0.00 18 7 0 27 0.00 27 8 0 27 0.00 27 9 0 18 0.00 18 10 0 30 0.00 30 11 1 28 3.45 29 12 0 30 0.00 30 13 0 24 0.00 24 14 0 21 0.00 21 15 0 16 0.00 16 16 0 23 0.00 23 17 0 24 0.00 24 18 0 25 0.00 25 19 0 31 0.00 31 20 0 34 0.00 34 21 0 30 0.00 30 22 0 32 0.00 32 23 0 21 0.00 21 24 0 28 0.00 28 25 1 24 4.00 25 26 1 28 3.45 29 27 0 35 0.00 35 28 0 31 0.00 31 29 0 25 0.00 25 30 0 21 0.00 21 31 0 29 0.00 29 32 0 18 0.00 18 33 2 19 9.52 21 34 0 22 0.00 22 35 0 32 0.00 32 36 0 30 0.00 30 37 1 28 3.45 29 38 0 23 0.00 23 39 0 33 0.00 33 40 1 20 4.76 21 41 0 25 0.00 25 42 1 21 4.55 22 43 0 18 0.00 18 44 0 21 0.00 21 45 0 17 0.00 17 46 0 21 0.00 21 47 0 28 0.00 28 48 0 22 0.00 22 49 0 34 0.00 34 50 0 31 0.00 31 51 1 28 3.45 29 52 0 17 0.00 17 53 0 20 0.00 20 54 1 14 6.67 15 55 0 26 0.00 26 56 0 21 0.00 21 57 0 17 0.00 17 58 0 26 0.00 26 59 1 20 4.76 21 60 0 28 0.00 28 61 0 17 0.00 17 62 1 23 4.17 24 63 0 11 0.00 11 64 0 22 0.00 22 65 0 16 0.00 16 66 0 18 0.00 18 67 0 15 0.00 15 68 0 12 0.00 12 69 1 12 7.69 13 70 0 18 0.00 18 71 0 12 0.00 12 72 0 13 0.00 13 73 0 13 0.00 13 74 0 21 0.00 21 75 0 11 0.00 11 76 0 9 0.00 9 77 1 14 6.67 15 78 0 13 0.00 13 79 1 12 7.69 13 80 1 17 5.56 18 81 1 22 4.35 23 82 0 12 0.00 12 83 0 21 0.00 21 84 0 10 0.00 10 85 0 13 0.00 13 86 0 14 0.00 14 87 0 11 0.00 11 88 0 13 0.00 13 89 0 12 0.00 12 90 1 9 10.00 10 91 0 17 0.00 17 92 0 12 0.00 12 93 0 13 0.00 13 94 0 7 0.00 7 95 0 10 0.00 10 96 0 10 0.00 10 97 0 10 0.00 10 98 0 17 0.00 17 99 0 11 0.00 11 100 0 13 0.00 13 101 0 15 0.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 33 15 68.75 48 2 23 9 71.88 32 3 9 18 33.33 27 4 5 23 17.86 28 5 2 20 9.09 22 6 2 26 7.14 28 7 2 36 5.26 38 8 0 27 0.00 27 9 0 22 0.00 22 10 0 28 0.00 28 11 0 31 0.00 31 12 0 26 0.00 26 13 1 21 4.55 22 14 0 33 0.00 33 15 0 24 0.00 24 16 0 24 0.00 24 17 0 26 0.00 26 18 0 22 0.00 22 19 1 26 3.70 27 20 2 33 5.71 35 21 1 30 3.23 31 22 0 26 0.00 26 23 0 25 0.00 25 24 0 32 0.00 32 25 0 26 0.00 26 26 1 26 3.70 27 27 2 33 5.71 35 28 0 30 0.00 30 29 0 16 0.00 16 30 1 30 3.23 31 31 1 16 5.88 17 32 0 30 0.00 30 33 1 24 4.00 25 34 0 31 0.00 31 35 0 36 0.00 36 36 0 42 0.00 42 37 0 34 0.00 34 38 1 22 4.35 23 39 1 26 3.70 27 40 0 22 0.00 22 41 0 32 0.00 32 42 0 31 0.00 31 43 0 26 0.00 26 44 0 26 0.00 26 45 1 20 4.76 21 46 0 29 0.00 29 47 0 24 0.00 24 48 0 16 0.00 16 49 0 16 0.00 16 50 0 22 0.00 22 51 0 18 0.00 18 52 0 20 0.00 20 53 0 17 0.00 17 54 1 33 2.94 34 55 1 17 5.56 18 56 1 33 2.94 34 57 1 25 3.85 26 58 0 24 0.00 24 59 0 28 0.00 28 60 0 21 0.00 21 61 0 24 0.00 24 62 0 23 0.00 23 63 0 26 0.00 26 64 0 20 0.00 20 65 0 12 0.00 12 66 0 19 0.00 19 67 0 18 0.00 18 68 1 16 5.88 17 69 2 15 11.76 17 70 0 31 0.00 31 71 0 13 0.00 13 72 0 16 0.00 16 73 0 25 0.00 25 74 0 10 0.00 10 75 0 16 0.00 16 76 0 18 0.00 18 77 1 17 5.56 18 78 0 14 0.00 14 79 0 13 0.00 13 80 0 16 0.00 16 81 0 12 0.00 12 82 0 17 0.00 17 83 1 10 9.09 11 84 0 12 0.00 12 85 0 9 0.00 9 86 0 19 0.00 19 87 0 17 0.00 17 88 1 13 7.14 14 89 0 8 0.00 8 90 1 11 8.33 12 91 0 14 0.00 14 92 3 6 33.33 9 93 2 11 15.38 13 94 0 16 0.00 16 95 0 16 0.00 16 96 1 12 7.69 13 97 0 4 0.00 4 98 1 9 10.00 10 99 0 5 0.00 5 100 0 9 0.00 9 101 0 8 0.00 8 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8 10 44.44 18 2 5 10 33.33 15 3 1 24 4.00 25 4 0 24 0.00 24 5 3 30 9.09 33 6 1 32 3.03 33 7 1 37 2.63 38 8 0 34 0.00 34 9 0 30 0.00 30 10 2 33 5.71 35 11 0 41 0.00 41 12 1 43 2.27 44 13 0 31 0.00 31 14 0 48 0.00 48 15 0 51 0.00 51 16 1 46 2.13 47 17 0 62 0.00 62 18 1 53 1.85 54 19 0 48 0.00 48 20 1 34 2.86 35 21 0 32 0.00 32 22 0 45 0.00 45 23 0 43 0.00 43 24 0 33 0.00 33 25 0 48 0.00 48 26 0 46 0.00 46 27 0 28 0.00 28 28 1 37 2.63 38 29 0 45 0.00 45 30 0 46 0.00 46 31 1 50 1.96 51 32 0 58 0.00 58 33 1 43 2.27 44 34 0 33 0.00 33 35 1 47 2.08 48 36 0 31 0.00 31 37 1 29 3.33 30 38 0 37 0.00 37 39 0 38 0.00 38 40 0 40 0.00 40 41 3 27 10.00 30 42 0 44 0.00 44 43 1 41 2.38 42 44 1 41 2.38 42 45 1 44 2.22 45 46 2 49 3.92 51 47 1 38 2.56 39 48 0 54 0.00 54 49 0 22 0.00 22 50 1 44 2.22 45 51 0 41 0.00 41 52 1 32 3.03 33 53 0 42 0.00 42 54 0 33 0.00 33 55 0 38 0.00 38 56 0 34 0.00 34 57 0 34 0.00 34 58 0 32 0.00 32 59 0 31 0.00 31 60 0 32 0.00 32 61 0 32 0.00 32 62 0 33 0.00 33 63 0 32 0.00 32 64 0 33 0.00 33 65 0 38 0.00 38 66 0 35 0.00 35 67 1 33 2.94 34 68 0 38 0.00 38 69 1 28 3.45 29 70 0 20 0.00 20 71 0 26 0.00 26 72 0 32 0.00 32 73 0 22 0.00 22 74 0 26 0.00 26 75 1 23 4.17 24 76 0 30 0.00 30 77 0 39 0.00 39 78 0 31 0.00 31 79 0 32 0.00 32 80 0 24 0.00 24 81 1 24 4.00 25 82 0 20 0.00 20 83 0 20 0.00 20 84 0 22 0.00 22 85 0 22 0.00 22 86 0 15 0.00 15 87 0 20 0.00 20 88 0 19 0.00 19 89 0 17 0.00 17 90 0 21 0.00 21 91 0 18 0.00 18 92 0 16 0.00 16 93 1 22 4.35 23 94 0 16 0.00 16 95 1 14 6.67 15 96 0 16 0.00 16 97 0 22 0.00 22 98 1 14 6.67 15 99 0 9 0.00 9 100 0 12 0.00 12 101 0 19 0.00 19 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 10 0.00 10 2 2 4 33.33 6 3 1 14 6.67 15 4 1 13 7.14 14 5 0 19 0.00 19 6 0 10 0.00 10 7 0 12 0.00 12 8 0 11 0.00 11 9 0 11 0.00 11 10 0 9 0.00 9 11 0 8 0.00 8 12 0 9 0.00 9 13 0 8 0.00 8 14 0 5 0.00 5 15 0 15 0.00 15 16 0 4 0.00 4 17 0 10 0.00 10 18 2 12 14.29 14 19 0 4 0.00 4 20 0 8 0.00 8 21 0 7 0.00 7 22 0 8 0.00 8 23 0 12 0.00 12 24 0 6 0.00 6 25 0 9 0.00 9 26 0 7 0.00 7 27 0 8 0.00 8 28 0 5 0.00 5 29 0 12 0.00 12 30 0 4 0.00 4 31 0 10 0.00 10 32 0 13 0.00 13 33 0 11 0.00 11 34 0 7 0.00 7 35 0 6 0.00 6 36 0 6 0.00 6 37 0 9 0.00 9 38 0 8 0.00 8 39 0 3 0.00 3 40 0 1 0.00 1 41 0 6 0.00 6 42 0 7 0.00 7 43 0 4 0.00 4 44 0 8 0.00 8 45 0 7 0.00 7 46 0 3 0.00 3 47 0 5 0.00 5 48 0 4 0.00 4 49 0 5 0.00 5 50 0 7 0.00 7 51 0 0 0 52 0 4 0.00 4 53 0 6 0.00 6 54 0 7 0.00 7 55 0 9 0.00 9 56 0 4 0.00 4 57 0 4 0.00 4 58 0 2 0.00 2 59 0 10 0.00 10 60 0 1 0.00 1 61 0 7 0.00 7 62 0 2 0.00 2 63 0 2 0.00 2 64 0 5 0.00 5 65 0 6 0.00 6 66 0 6 0.00 6 67 0 5 0.00 5 68 0 7 0.00 7 69 0 6 0.00 6 70 0 5 0.00 5 71 0 4 0.00 4 72 0 2 0.00 2 73 0 2 0.00 2 74 0 5 0.00 5 75 0 2 0.00 2 76 0 2 0.00 2 77 0 2 0.00 2 78 0 2 0.00 2 79 0 5 0.00 5 80 0 3 0.00 3 81 0 2 0.00 2 82 0 4 0.00 4 83 0 5 0.00 5 84 0 3 0.00 3 85 0 1 0.00 1 86 0 1 0.00 1 87 0 2 0.00 2 88 0 3 0.00 3 89 0 3 0.00 3 90 0 1 0.00 1 91 0 0 0 92 0 1 0.00 1 93 0 1 0.00 1 94 0 2 0.00 2 95 0 1 0.00 1 96 0 2 0.00 2 97 0 1 0.00 1 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 6 14.29 7 2 3 11 21.43 14 3 3 6 33.33 9 4 0 9 0.00 9 5 0 12 0.00 12 6 0 18 0.00 18 7 0 10 0.00 10 8 0 5 0.00 5 9 0 6 0.00 6 10 1 12 7.69 13 11 0 5 0.00 5 12 0 11 0.00 11 13 0 10 0.00 10 14 0 5 0.00 5 15 0 10 0.00 10 16 0 11 0.00 11 17 0 3 0.00 3 18 0 11 0.00 11 19 0 8 0.00 8 20 0 3 0.00 3 21 0 10 0.00 10 22 0 6 0.00 6 23 1 6 14.29 7 24 0 3 0.00 3 25 0 6 0.00 6 26 3 7 30.00 10 27 0 5 0.00 5 28 0 14 0.00 14 29 0 9 0.00 9 30 0 10 0.00 10 31 0 3 0.00 3 32 0 6 0.00 6 33 0 11 0.00 11 34 0 8 0.00 8 35 0 4 0.00 4 36 0 8 0.00 8 37 0 10 0.00 10 38 0 11 0.00 11 39 0 4 0.00 4 40 0 4 0.00 4 41 0 5 0.00 5 42 0 4 0.00 4 43 0 4 0.00 4 44 0 8 0.00 8 45 0 6 0.00 6 46 0 6 0.00 6 47 0 5 0.00 5 48 0 7 0.00 7 49 0 2 0.00 2 50 0 8 0.00 8 51 0 5 0.00 5 52 0 5 0.00 5 53 0 4 0.00 4 54 0 3 0.00 3 55 0 5 0.00 5 56 0 7 0.00 7 57 0 1 0.00 1 58 0 2 0.00 2 59 0 5 0.00 5 60 1 1 50.00 2 61 0 1 0.00 1 62 1 3 25.00 4 63 0 2 0.00 2 64 0 11 0.00 11 65 0 2 0.00 2 66 0 2 0.00 2 67 0 2 0.00 2 68 4 2 66.67 6 69 0 9 0.00 9 70 0 5 0.00 5 71 1 4 20.00 5 72 0 4 0.00 4 73 0 4 0.00 4 74 0 1 0.00 1 75 0 5 0.00 5 76 0 1 0.00 1 77 0 2 0.00 2 78 0 2 0.00 2 79 0 3 0.00 3 80 0 0 0 81 1 2 33.33 3 82 0 2 0.00 2 83 0 4 0.00 4 84 0 6 0.00 6 85 1 3 25.00 4 86 0 1 0.00 1 87 0 1 0.00 1 88 0 4 0.00 4 89 0 3 0.00 3 90 0 1 0.00 1 91 0 2 0.00 2 92 0 1 0.00 1 93 0 2 0.00 2 94 0 4 0.00 4 95 0 0 0 96 0 2 0.00 2 97 0 4 0.00 4 98 0 4 0.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 1 3 25.00 4 3 0 7 0.00 7 4 0 1 0.00 1 5 0 8 0.00 8 6 0 7 0.00 7 7 0 20 0.00 20 8 0 18 0.00 18 9 0 24 0.00 24 10 0 24 0.00 24 11 0 25 0.00 25 12 0 16 0.00 16 13 0 23 0.00 23 14 0 20 0.00 20 15 1 12 7.69 13 16 0 13 0.00 13 17 0 21 0.00 21 18 0 13 0.00 13 19 2 15 11.76 17 20 0 8 0.00 8 21 0 11 0.00 11 22 0 15 0.00 15 23 0 15 0.00 15 24 0 10 0.00 10 25 0 4 0.00 4 26 0 14 0.00 14 27 0 15 0.00 15 28 0 9 0.00 9 29 0 18 0.00 18 30 0 6 0.00 6 31 0 5 0.00 5 32 0 6 0.00 6 33 0 12 0.00 12 34 0 15 0.00 15 35 0 11 0.00 11 36 0 17 0.00 17 37 0 13 0.00 13 38 0 7 0.00 7 39 0 9 0.00 9 40 0 15 0.00 15 41 0 5 0.00 5 42 0 4 0.00 4 43 0 8 0.00 8 44 0 8 0.00 8 45 0 9 0.00 9 46 0 12 0.00 12 47 0 7 0.00 7 48 0 7 0.00 7 49 0 10 0.00 10 50 0 5 0.00 5 51 0 9 0.00 9 52 0 7 0.00 7 53 0 11 0.00 11 54 0 5 0.00 5 55 0 14 0.00 14 56 0 9 0.00 9 57 0 11 0.00 11 58 0 5 0.00 5 59 0 10 0.00 10 60 0 10 0.00 10 61 0 8 0.00 8 62 0 4 0.00 4 63 0 5 0.00 5 64 0 5 0.00 5 65 0 5 0.00 5 66 0 9 0.00 9 67 0 5 0.00 5 68 0 8 0.00 8 69 0 6 0.00 6 70 0 5 0.00 5 71 0 10 0.00 10 72 0 8 0.00 8 73 0 5 0.00 5 74 0 9 0.00 9 75 0 10 0.00 10 76 0 6 0.00 6 77 0 5 0.00 5 78 0 4 0.00 4 79 0 8 0.00 8 80 0 6 0.00 6 81 0 3 0.00 3 82 0 5 0.00 5 83 0 8 0.00 8 84 0 8 0.00 8 85 0 7 0.00 7 86 0 7 0.00 7 87 0 3 0.00 3 88 0 2 0.00 2 89 0 2 0.00 2 90 0 6 0.00 6 91 0 6 0.00 6 92 0 6 0.00 6 93 0 6 0.00 6 94 0 3 0.00 3 95 0 4 0.00 4 96 0 5 0.00 5 97 0 3 0.00 3 98 0 8 0.00 8