/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-200_S25_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
472
Pairs without alignments under any condition
99528
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
16786
Methylated C's in CpG context
54
Methylated C's in CHG context
226
Methylated C's in CHH context
92
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
4640
Unmethylated C's in CHG context
4649
Unmethylated C's in CHH context
7125
Unmethylated C's in Unknown context
7
Percentage methylation (CpG context)
1.2%
Percentage methylation (CHG context)
4.6%
Percentage methylation (CHH context)
1.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
322
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
150
original bottom strand
Deduplication
Alignments analysed
472
Unique alignments
430
Duplicates removed
42
Duplicated alignments were found at 34 different positions
