CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 53 1.85 54 2 2 56 3.45 58 3 2 44 4.35 46 4 0 35 0.00 35 5 0 28 0.00 28 6 0 19 0.00 19 7 1 28 3.45 29 8 0 19 0.00 19 9 0 22 0.00 22 10 0 25 0.00 25 11 0 21 0.00 21 12 0 24 0.00 24 13 0 16 0.00 16 14 0 20 0.00 20 15 0 21 0.00 21 16 0 23 0.00 23 17 0 22 0.00 22 18 0 24 0.00 24 19 0 25 0.00 25 20 0 25 0.00 25 21 0 36 0.00 36 22 0 20 0.00 20 23 0 20 0.00 20 24 0 21 0.00 21 25 0 22 0.00 22 26 0 22 0.00 22 27 0 36 0.00 36 28 0 29 0.00 29 29 1 21 4.55 22 30 0 25 0.00 25 31 0 29 0.00 29 32 1 21 4.55 22 33 0 25 0.00 25 34 0 26 0.00 26 35 0 20 0.00 20 36 0 33 0.00 33 37 0 31 0.00 31 38 0 24 0.00 24 39 0 24 0.00 24 40 0 32 0.00 32 41 0 18 0.00 18 42 1 27 3.57 28 43 1 18 5.26 19 44 0 19 0.00 19 45 2 23 8.00 25 46 0 20 0.00 20 47 0 13 0.00 13 48 0 20 0.00 20 49 0 33 0.00 33 50 0 26 0.00 26 51 1 25 3.85 26 52 0 18 0.00 18 53 0 21 0.00 21 54 0 26 0.00 26 55 0 29 0.00 29 56 2 21 8.70 23 57 2 25 7.41 27 58 0 24 0.00 24 59 1 35 2.78 36 60 0 22 0.00 22 61 1 17 5.56 18 62 0 21 0.00 21 63 0 27 0.00 27 64 0 20 0.00 20 65 0 17 0.00 17 66 0 13 0.00 13 67 0 21 0.00 21 68 1 21 4.55 22 69 0 13 0.00 13 70 0 12 0.00 12 71 1 19 5.00 20 72 1 17 5.56 18 73 0 17 0.00 17 74 0 17 0.00 17 75 0 17 0.00 17 76 0 17 0.00 17 77 0 14 0.00 14 78 0 19 0.00 19 79 1 16 5.88 17 80 0 11 0.00 11 81 1 18 5.26 19 82 0 19 0.00 19 83 0 15 0.00 15 84 0 14 0.00 14 85 0 11 0.00 11 86 0 14 0.00 14 87 0 14 0.00 14 88 0 12 0.00 12 89 0 15 0.00 15 90 1 12 7.69 13 91 0 18 0.00 18 92 0 9 0.00 9 93 0 8 0.00 8 94 0 13 0.00 13 95 0 9 0.00 9 96 0 9 0.00 9 97 0 8 0.00 8 98 0 7 0.00 7 99 0 10 0.00 10 100 0 13 0.00 13 101 0 19 0.00 19 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 28 14 66.67 42 2 15 12 55.56 27 3 6 14 30.00 20 4 7 20 25.93 27 5 3 26 10.34 29 6 3 12 20.00 15 7 2 23 8.00 25 8 0 25 0.00 25 9 0 23 0.00 23 10 1 20 4.76 21 11 0 34 0.00 34 12 0 28 0.00 28 13 0 21 0.00 21 14 0 35 0.00 35 15 0 22 0.00 22 16 1 20 4.76 21 17 0 25 0.00 25 18 0 30 0.00 30 19 0 18 0.00 18 20 0 30 0.00 30 21 0 21 0.00 21 22 0 26 0.00 26 23 0 22 0.00 22 24 0 27 0.00 27 25 0 31 0.00 31 26 0 30 0.00 30 27 0 30 0.00 30 28 0 24 0.00 24 29 0 35 0.00 35 30 0 29 0.00 29 31 1 32 3.03 33 32 0 26 0.00 26 33 1 25 3.85 26 34 1 26 3.70 27 35 0 32 0.00 32 36 1 38 2.56 39 37 0 22 0.00 22 38 0 16 0.00 16 39 1 25 3.85 26 40 1 22 4.35 23 41 0 26 0.00 26 42 0 27 0.00 27 43 1 20 4.76 21 44 0 16 0.00 16 45 0 20 0.00 20 46 0 18 0.00 18 47 0 27 0.00 27 48 0 14 0.00 14 49 0 24 0.00 24 50 0 24 0.00 24 51 1 26 3.70 27 52 1 26 3.70 27 53 0 36 0.00 36 54 1 29 3.33 30 55 1 16 5.88 17 56 0 22 0.00 22 57 0 14 0.00 14 58 0 20 0.00 20 59 1 19 5.00 20 60 0 18 0.00 18 61 0 25 0.00 25 62 1 22 4.35 23 63 0 33 0.00 33 64 0 19 0.00 19 65 0 13 0.00 13 66 1 22 4.35 23 67 1 27 3.57 28 68 0 14 0.00 14 69 0 22 0.00 22 70 0 24 0.00 24 71 0 19 0.00 19 72 0 12 0.00 12 73 0 18 0.00 18 74 0 16 0.00 16 75 0 26 0.00 26 76 2 13 13.33 15 77 0 13 0.00 13 78 1 18 5.26 19 79 0 11 0.00 11 80 0 16 0.00 16 81 0 16 0.00 16 82 1 15 6.25 16 83 0 13 0.00 13 84 0 16 0.00 16 85 0 10 0.00 10 86 1 14 6.67 15 87 0 16 0.00 16 88 1 13 7.14 14 89 0 14 0.00 14 90 1 13 7.14 14 91 1 9 10.00 10 92 0 13 0.00 13 93 0 15 0.00 15 94 0 10 0.00 10 95 0 6 0.00 6 96 0 13 0.00 13 97 0 10 0.00 10 98 0 7 0.00 7 99 0 4 0.00 4 100 0 11 0.00 11 101 0 12 0.00 12 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 6 53.85 13 2 3 13 18.75 16 3 1 29 3.33 30 4 1 24 4.00 25 5 2 31 6.06 33 6 0 37 0.00 37 7 0 44 0.00 44 8 0 35 0.00 35 9 1 35 2.78 36 10 1 47 2.08 48 11 0 44 0.00 44 12 0 35 0.00 35 13 0 41 0.00 41 14 0 35 0.00 35 15 0 38 0.00 38 16 1 53 1.85 54 17 1 46 2.13 47 18 1 49 2.00 50 19 1 47 2.08 48 20 0 36 0.00 36 21 2 42 4.55 44 22 2 31 6.06 33 23 0 41 0.00 41 24 1 41 2.38 42 25 0 50 0.00 50 26 0 53 0.00 53 27 0 41 0.00 41 28 0 43 0.00 43 29 0 57 0.00 57 30 0 38 0.00 38 31 0 50 0.00 50 32 0 48 0.00 48 33 0 49 0.00 49 34 0 41 0.00 41 35 0 26 0.00 26 36 1 31 3.12 32 37 0 29 0.00 29 38 0 26 0.00 26 39 1 28 3.45 29 40 1 38 2.56 39 41 0 29 0.00 29 42 1 34 2.86 35 43 0 33 0.00 33 44 0 43 0.00 43 45 0 52 0.00 52 46 0 55 0.00 55 47 1 46 2.13 47 48 2 48 4.00 50 49 0 24 0.00 24 50 0 32 0.00 32 51 1 32 3.03 33 52 0 35 0.00 35 53 0 39 0.00 39 54 2 31 6.06 33 55 0 51 0.00 51 56 0 39 0.00 39 57 0 41 0.00 41 58 0 37 0.00 37 59 0 33 0.00 33 60 0 32 0.00 32 61 0 34 0.00 34 62 0 31 0.00 31 63 0 30 0.00 30 64 0 31 0.00 31 65 0 36 0.00 36 66 0 39 0.00 39 67 0 26 0.00 26 68 0 30 0.00 30 69 0 30 0.00 30 70 1 27 3.57 28 71 0 21 0.00 21 72 0 29 0.00 29 73 0 28 0.00 28 74 0 25 0.00 25 75 0 31 0.00 31 76 1 29 3.33 30 77 1 30 3.23 31 78 0 32 0.00 32 79 1 31 3.12 32 80 0 34 0.00 34 81 0 32 0.00 32 82 0 20 0.00 20 83 0 19 0.00 19 84 0 27 0.00 27 85 0 25 0.00 25 86 0 21 0.00 21 87 0 25 0.00 25 88 0 20 0.00 20 89 0 27 0.00 27 90 0 16 0.00 16 91 0 20 0.00 20 92 0 21 0.00 21 93 0 24 0.00 24 94 0 18 0.00 18 95 0 15 0.00 15 96 0 12 0.00 12 97 0 22 0.00 22 98 0 15 0.00 15 99 0 9 0.00 9 100 0 12 0.00 12 101 0 13 0.00 13 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 12 7.69 13 2 2 9 18.18 11 3 2 22 8.33 24 4 0 12 0.00 12 5 2 11 15.38 13 6 0 7 0.00 7 7 0 10 0.00 10 8 0 10 0.00 10 9 0 11 0.00 11 10 0 7 0.00 7 11 0 6 0.00 6 12 0 11 0.00 11 13 0 12 0.00 12 14 0 8 0.00 8 15 0 7 0.00 7 16 0 5 0.00 5 17 0 6 0.00 6 18 1 9 10.00 10 19 0 4 0.00 4 20 0 13 0.00 13 21 0 9 0.00 9 22 0 2 0.00 2 23 2 6 25.00 8 24 0 6 0.00 6 25 0 14 0.00 14 26 0 5 0.00 5 27 0 10 0.00 10 28 0 11 0.00 11 29 0 9 0.00 9 30 0 5 0.00 5 31 0 17 0.00 17 32 0 8 0.00 8 33 0 6 0.00 6 34 0 7 0.00 7 35 0 6 0.00 6 36 0 7 0.00 7 37 0 9 0.00 9 38 0 6 0.00 6 39 0 9 0.00 9 40 0 3 0.00 3 41 0 2 0.00 2 42 0 8 0.00 8 43 0 7 0.00 7 44 0 3 0.00 3 45 0 1 0.00 1 46 0 1 0.00 1 47 0 9 0.00 9 48 0 8 0.00 8 49 0 6 0.00 6 50 0 4 0.00 4 51 0 3 0.00 3 52 0 3 0.00 3 53 0 4 0.00 4 54 0 1 0.00 1 55 0 4 0.00 4 56 0 1 0.00 1 57 0 6 0.00 6 58 0 2 0.00 2 59 0 5 0.00 5 60 0 2 0.00 2 61 0 3 0.00 3 62 0 4 0.00 4 63 0 2 0.00 2 64 0 6 0.00 6 65 0 1 0.00 1 66 0 4 0.00 4 67 0 3 0.00 3 68 0 3 0.00 3 69 0 1 0.00 1 70 0 0 0 71 0 2 0.00 2 72 0 4 0.00 4 73 0 2 0.00 2 74 0 1 0.00 1 75 0 3 0.00 3 76 0 0 0 77 0 1 0.00 1 78 0 5 0.00 5 79 0 2 0.00 2 80 0 1 0.00 1 81 0 5 0.00 5 82 0 2 0.00 2 83 0 3 0.00 3 84 0 2 0.00 2 85 0 0 0 86 0 4 0.00 4 87 0 3 0.00 3 88 0 2 0.00 2 89 0 3 0.00 3 90 0 1 0.00 1 91 0 1 0.00 1 92 0 4 0.00 4 93 0 2 0.00 2 94 0 1 0.00 1 95 0 3 0.00 3 96 0 2 0.00 2 97 0 1 0.00 1 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 9 10.00 10 2 0 8 0.00 8 3 2 10 16.67 12 4 2 10 16.67 12 5 0 13 0.00 13 6 0 14 0.00 14 7 0 7 0.00 7 8 0 7 0.00 7 9 0 7 0.00 7 10 1 11 8.33 12 11 0 6 0.00 6 12 0 8 0.00 8 13 0 6 0.00 6 14 0 11 0.00 11 15 1 12 7.69 13 16 0 4 0.00 4 17 0 8 0.00 8 18 0 5 0.00 5 19 0 8 0.00 8 20 0 9 0.00 9 21 0 7 0.00 7 22 0 11 0.00 11 23 0 5 0.00 5 24 0 7 0.00 7 25 0 1 0.00 1 26 0 9 0.00 9 27 1 9 10.00 10 28 0 7 0.00 7 29 1 11 8.33 12 30 1 5 16.67 6 31 0 2 0.00 2 32 0 3 0.00 3 33 0 10 0.00 10 34 1 6 14.29 7 35 0 2 0.00 2 36 0 9 0.00 9 37 0 6 0.00 6 38 0 2 0.00 2 39 0 4 0.00 4 40 0 10 0.00 10 41 0 5 0.00 5 42 0 3 0.00 3 43 0 5 0.00 5 44 0 6 0.00 6 45 1 2 33.33 3 46 0 4 0.00 4 47 1 2 33.33 3 48 0 6 0.00 6 49 0 5 0.00 5 50 0 1 0.00 1 51 0 5 0.00 5 52 0 4 0.00 4 53 0 4 0.00 4 54 0 1 0.00 1 55 0 3 0.00 3 56 0 4 0.00 4 57 0 2 0.00 2 58 0 3 0.00 3 59 0 4 0.00 4 60 0 1 0.00 1 61 0 3 0.00 3 62 0 3 0.00 3 63 0 7 0.00 7 64 0 4 0.00 4 65 0 0 0 66 0 3 0.00 3 67 0 3 0.00 3 68 2 4 33.33 6 69 0 6 0.00 6 70 1 8 11.11 9 71 0 5 0.00 5 72 0 3 0.00 3 73 0 4 0.00 4 74 0 3 0.00 3 75 1 5 16.67 6 76 0 2 0.00 2 77 0 3 0.00 3 78 0 4 0.00 4 79 0 3 0.00 3 80 0 1 0.00 1 81 0 2 0.00 2 82 0 2 0.00 2 83 0 1 0.00 1 84 0 5 0.00 5 85 0 6 0.00 6 86 0 1 0.00 1 87 0 4 0.00 4 88 0 3 0.00 3 89 0 4 0.00 4 90 0 1 0.00 1 91 0 4 0.00 4 92 0 4 0.00 4 93 0 2 0.00 2 94 0 5 0.00 5 95 0 0 0 96 0 3 0.00 3 97 0 1 0.00 1 98 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 4 20.00 5 2 0 4 0.00 4 3 0 4 0.00 4 4 1 4 20.00 5 5 0 8 0.00 8 6 0 10 0.00 10 7 0 9 0.00 9 8 0 16 0.00 16 9 0 20 0.00 20 10 0 15 0.00 15 11 0 20 0.00 20 12 0 19 0.00 19 13 0 16 0.00 16 14 0 13 0.00 13 15 0 32 0.00 32 16 0 24 0.00 24 17 0 16 0.00 16 18 0 18 0.00 18 19 0 18 0.00 18 20 0 9 0.00 9 21 0 10 0.00 10 22 0 20 0.00 20 23 1 19 5.00 20 24 0 14 0.00 14 25 0 11 0.00 11 26 0 11 0.00 11 27 0 10 0.00 10 28 0 15 0.00 15 29 0 10 0.00 10 30 0 11 0.00 11 31 0 8 0.00 8 32 0 12 0.00 12 33 0 12 0.00 12 34 0 13 0.00 13 35 0 13 0.00 13 36 0 17 0.00 17 37 0 12 0.00 12 38 0 9 0.00 9 39 0 18 0.00 18 40 0 12 0.00 12 41 0 9 0.00 9 42 1 4 20.00 5 43 0 9 0.00 9 44 0 8 0.00 8 45 0 13 0.00 13 46 0 13 0.00 13 47 0 10 0.00 10 48 0 10 0.00 10 49 0 9 0.00 9 50 0 11 0.00 11 51 0 10 0.00 10 52 0 12 0.00 12 53 0 15 0.00 15 54 0 10 0.00 10 55 0 8 0.00 8 56 0 6 0.00 6 57 0 13 0.00 13 58 0 5 0.00 5 59 0 6 0.00 6 60 0 9 0.00 9 61 0 8 0.00 8 62 0 8 0.00 8 63 0 8 0.00 8 64 0 10 0.00 10 65 0 11 0.00 11 66 0 9 0.00 9 67 0 3 0.00 3 68 0 9 0.00 9 69 0 8 0.00 8 70 0 10 0.00 10 71 0 15 0.00 15 72 0 2 0.00 2 73 0 6 0.00 6 74 0 7 0.00 7 75 0 4 0.00 4 76 0 6 0.00 6 77 0 7 0.00 7 78 0 6 0.00 6 79 0 6 0.00 6 80 0 6 0.00 6 81 0 4 0.00 4 82 0 8 0.00 8 83 0 6 0.00 6 84 0 6 0.00 6 85 0 5 0.00 5 86 0 3 0.00 3 87 0 6 0.00 6 88 0 5 0.00 5 89 0 7 0.00 7 90 0 5 0.00 5 91 0 6 0.00 6 92 0 5 0.00 5 93 1 5 16.67 6 94 0 5 0.00 5 95 0 4 0.00 4 96 0 5 0.00 5 97 0 3 0.00 3 98 0 6 0.00 6