CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 60 1.64 61 2 1 58 1.69 59 3 1 68 1.45 69 4 0 42 0.00 42 5 0 32 0.00 32 6 0 26 0.00 26 7 0 32 0.00 32 8 0 34 0.00 34 9 0 20 0.00 20 10 0 28 0.00 28 11 0 35 0.00 35 12 0 30 0.00 30 13 0 27 0.00 27 14 0 36 0.00 36 15 0 35 0.00 35 16 0 32 0.00 32 17 0 39 0.00 39 18 1 31 3.12 32 19 0 38 0.00 38 20 1 50 1.96 51 21 0 46 0.00 46 22 0 42 0.00 42 23 0 25 0.00 25 24 0 41 0.00 41 25 0 28 0.00 28 26 0 25 0.00 25 27 1 39 2.50 40 28 0 41 0.00 41 29 0 29 0.00 29 30 1 32 3.03 33 31 0 37 0.00 37 32 0 35 0.00 35 33 0 45 0.00 45 34 1 38 2.56 39 35 0 26 0.00 26 36 0 32 0.00 32 37 0 37 0.00 37 38 1 36 2.70 37 39 0 44 0.00 44 40 0 28 0.00 28 41 1 26 3.70 27 42 0 30 0.00 30 43 0 38 0.00 38 44 0 29 0.00 29 45 0 34 0.00 34 46 1 26 3.70 27 47 0 36 0.00 36 48 1 33 2.94 34 49 1 30 3.23 31 50 0 31 0.00 31 51 0 38 0.00 38 52 0 30 0.00 30 53 0 38 0.00 38 54 0 44 0.00 44 55 0 33 0.00 33 56 2 30 6.25 32 57 1 37 2.63 38 58 0 36 0.00 36 59 0 45 0.00 45 60 0 43 0.00 43 61 0 26 0.00 26 62 0 30 0.00 30 63 0 30 0.00 30 64 0 22 0.00 22 65 0 27 0.00 27 66 0 31 0.00 31 67 1 36 2.70 37 68 0 32 0.00 32 69 0 29 0.00 29 70 2 26 7.14 28 71 0 26 0.00 26 72 0 33 0.00 33 73 0 25 0.00 25 74 0 27 0.00 27 75 0 31 0.00 31 76 0 31 0.00 31 77 0 23 0.00 23 78 0 34 0.00 34 79 1 22 4.35 23 80 0 28 0.00 28 81 0 41 0.00 41 82 2 17 10.53 19 83 0 24 0.00 24 84 0 26 0.00 26 85 2 32 5.88 34 86 0 23 0.00 23 87 0 27 0.00 27 88 0 21 0.00 21 89 3 18 14.29 21 90 0 18 0.00 18 91 1 25 3.85 26 92 1 19 5.00 20 93 0 38 0.00 38 94 0 26 0.00 26 95 0 21 0.00 21 96 1 18 5.26 19 97 0 28 0.00 28 98 0 19 0.00 19 99 0 19 0.00 19 100 0 14 0.00 14 101 2 9 18.18 11 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 31 24 56.36 55 2 20 15 57.14 35 3 13 30 30.23 43 4 5 18 21.74 23 5 2 25 7.41 27 6 3 27 10.00 30 7 0 42 0.00 42 8 1 23 4.17 24 9 1 26 3.70 27 10 0 38 0.00 38 11 0 34 0.00 34 12 5 25 16.67 30 13 0 36 0.00 36 14 0 35 0.00 35 15 1 33 2.94 34 16 0 28 0.00 28 17 0 37 0.00 37 18 0 21 0.00 21 19 0 36 0.00 36 20 1 36 2.70 37 21 0 29 0.00 29 22 0 27 0.00 27 23 1 42 2.33 43 24 1 34 2.86 35 25 1 37 2.63 38 26 0 41 0.00 41 27 2 38 5.00 40 28 0 35 0.00 35 29 1 26 3.70 27 30 0 43 0.00 43 31 1 22 4.35 23 32 1 36 2.70 37 33 2 38 5.00 40 34 2 29 6.45 31 35 0 35 0.00 35 36 0 45 0.00 45 37 1 34 2.86 35 38 1 28 3.45 29 39 0 39 0.00 39 40 4 37 9.76 41 41 0 32 0.00 32 42 0 48 0.00 48 43 0 20 0.00 20 44 1 29 3.33 30 45 0 20 0.00 20 46 0 32 0.00 32 47 1 41 2.38 42 48 1 28 3.45 29 49 0 25 0.00 25 50 1 30 3.23 31 51 0 23 0.00 23 52 1 27 3.57 28 53 0 34 0.00 34 54 1 29 3.33 30 55 0 37 0.00 37 56 1 32 3.03 33 57 0 32 0.00 32 58 1 31 3.12 32 59 0 36 0.00 36 60 1 29 3.33 30 61 0 37 0.00 37 62 0 39 0.00 39 63 0 25 0.00 25 64 1 29 3.33 30 65 1 31 3.12 32 66 0 34 0.00 34 67 0 30 0.00 30 68 0 31 0.00 31 69 0 38 0.00 38 70 0 26 0.00 26 71 0 26 0.00 26 72 0 31 0.00 31 73 2 25 7.41 27 74 0 28 0.00 28 75 0 25 0.00 25 76 0 21 0.00 21 77 0 27 0.00 27 78 0 22 0.00 22 79 0 17 0.00 17 80 2 31 6.06 33 81 1 17 5.56 18 82 1 24 4.00 25 83 0 28 0.00 28 84 0 22 0.00 22 85 1 19 5.00 20 86 0 14 0.00 14 87 1 21 4.55 22 88 2 28 6.67 30 89 0 26 0.00 26 90 1 20 4.76 21 91 2 11 15.38 13 92 0 27 0.00 27 93 0 23 0.00 23 94 1 21 4.55 22 95 0 22 0.00 22 96 0 21 0.00 21 97 1 14 6.67 15 98 4 15 21.05 19 99 2 10 16.67 12 100 2 13 13.33 15 101 0 20 0.00 20 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 11 50.00 22 2 6 18 25.00 24 3 3 34 8.11 37 4 4 33 10.81 37 5 3 30 9.09 33 6 3 46 6.12 49 7 0 47 0.00 47 8 0 51 0.00 51 9 0 41 0.00 41 10 0 46 0.00 46 11 0 42 0.00 42 12 1 40 2.44 41 13 0 50 0.00 50 14 0 48 0.00 48 15 0 46 0.00 46 16 0 65 0.00 65 17 0 48 0.00 48 18 0 50 0.00 50 19 0 60 0.00 60 20 0 37 0.00 37 21 0 53 0.00 53 22 1 51 1.92 52 23 0 40 0.00 40 24 0 66 0.00 66 25 1 52 1.89 53 26 0 57 0.00 57 27 0 46 0.00 46 28 1 56 1.75 57 29 3 58 4.92 61 30 1 58 1.69 59 31 0 72 0.00 72 32 0 58 0.00 58 33 1 57 1.72 58 34 0 50 0.00 50 35 1 54 1.82 55 36 0 57 0.00 57 37 0 40 0.00 40 38 1 38 2.56 39 39 0 56 0.00 56 40 0 46 0.00 46 41 0 51 0.00 51 42 0 41 0.00 41 43 0 61 0.00 61 44 0 48 0.00 48 45 0 69 0.00 69 46 0 72 0.00 72 47 0 49 0.00 49 48 0 62 0.00 62 49 0 58 0.00 58 50 0 61 0.00 61 51 0 73 0.00 73 52 0 47 0.00 47 53 0 54 0.00 54 54 1 45 2.17 46 55 1 51 1.92 52 56 0 45 0.00 45 57 0 55 0.00 55 58 2 43 4.44 45 59 0 50 0.00 50 60 0 51 0.00 51 61 1 38 2.56 39 62 1 41 2.38 42 63 0 50 0.00 50 64 0 51 0.00 51 65 1 40 2.44 41 66 0 49 0.00 49 67 0 42 0.00 42 68 0 36 0.00 36 69 0 39 0.00 39 70 1 47 2.08 48 71 2 39 4.88 41 72 1 55 1.79 56 73 0 51 0.00 51 74 0 46 0.00 46 75 0 40 0.00 40 76 0 39 0.00 39 77 1 54 1.82 55 78 0 52 0.00 52 79 0 47 0.00 47 80 0 34 0.00 34 81 0 43 0.00 43 82 0 35 0.00 35 83 0 37 0.00 37 84 0 35 0.00 35 85 0 44 0.00 44 86 0 29 0.00 29 87 0 39 0.00 39 88 0 28 0.00 28 89 0 25 0.00 25 90 0 22 0.00 22 91 0 37 0.00 37 92 0 28 0.00 28 93 0 47 0.00 47 94 2 40 4.76 42 95 1 36 2.70 37 96 0 31 0.00 31 97 0 32 0.00 32 98 0 22 0.00 22 99 0 24 0.00 24 100 0 19 0.00 19 101 0 28 0.00 28 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 17 19.05 21 2 2 16 11.11 18 3 4 25 13.79 29 4 0 26 0.00 26 5 0 40 0.00 40 6 0 17 0.00 17 7 0 14 0.00 14 8 0 17 0.00 17 9 0 18 0.00 18 10 0 20 0.00 20 11 0 15 0.00 15 12 0 18 0.00 18 13 0 15 0.00 15 14 0 16 0.00 16 15 0 14 0.00 14 16 0 6 0.00 6 17 0 18 0.00 18 18 0 19 0.00 19 19 0 17 0.00 17 20 0 15 0.00 15 21 1 14 6.67 15 22 0 10 0.00 10 23 0 9 0.00 9 24 1 22 4.35 23 25 0 21 0.00 21 26 1 15 6.25 16 27 0 7 0.00 7 28 0 14 0.00 14 29 0 22 0.00 22 30 0 8 0.00 8 31 0 15 0.00 15 32 0 11 0.00 11 33 0 8 0.00 8 34 0 4 0.00 4 35 0 8 0.00 8 36 0 11 0.00 11 37 0 10 0.00 10 38 0 11 0.00 11 39 0 8 0.00 8 40 0 7 0.00 7 41 0 15 0.00 15 42 0 10 0.00 10 43 0 5 0.00 5 44 0 6 0.00 6 45 0 3 0.00 3 46 0 8 0.00 8 47 0 10 0.00 10 48 0 12 0.00 12 49 0 4 0.00 4 50 0 4 0.00 4 51 0 7 0.00 7 52 0 7 0.00 7 53 0 3 0.00 3 54 0 6 0.00 6 55 0 6 0.00 6 56 0 5 0.00 5 57 0 4 0.00 4 58 0 5 0.00 5 59 0 11 0.00 11 60 0 6 0.00 6 61 0 7 0.00 7 62 0 6 0.00 6 63 0 13 0.00 13 64 0 3 0.00 3 65 0 13 0.00 13 66 0 3 0.00 3 67 0 6 0.00 6 68 0 4 0.00 4 69 0 5 0.00 5 70 0 4 0.00 4 71 0 5 0.00 5 72 0 6 0.00 6 73 0 5 0.00 5 74 0 4 0.00 4 75 0 7 0.00 7 76 0 3 0.00 3 77 0 5 0.00 5 78 0 3 0.00 3 79 0 10 0.00 10 80 0 4 0.00 4 81 0 5 0.00 5 82 0 2 0.00 2 83 0 5 0.00 5 84 0 5 0.00 5 85 0 0 0 86 0 2 0.00 2 87 0 8 0.00 8 88 0 1 0.00 1 89 0 2 0.00 2 90 0 7 0.00 7 91 0 4 0.00 4 92 0 0 0 93 1 7 12.50 8 94 0 5 0.00 5 95 0 3 0.00 3 96 0 6 0.00 6 97 0 1 0.00 1 98 0 4 0.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 8 20.00 10 2 1 11 8.33 12 3 3 13 18.75 16 4 7 8 46.67 15 5 0 22 0.00 22 6 1 26 3.70 27 7 0 11 0.00 11 8 0 13 0.00 13 9 0 18 0.00 18 10 0 20 0.00 20 11 0 24 0.00 24 12 0 17 0.00 17 13 0 18 0.00 18 14 0 11 0.00 11 15 0 26 0.00 26 16 0 13 0.00 13 17 0 12 0.00 12 18 0 15 0.00 15 19 0 15 0.00 15 20 0 11 0.00 11 21 0 12 0.00 12 22 0 10 0.00 10 23 0 15 0.00 15 24 0 13 0.00 13 25 0 13 0.00 13 26 1 9 10.00 10 27 0 13 0.00 13 28 0 14 0.00 14 29 0 18 0.00 18 30 0 15 0.00 15 31 0 7 0.00 7 32 0 3 0.00 3 33 0 22 0.00 22 34 2 12 14.29 14 35 1 8 11.11 9 36 0 16 0.00 16 37 0 8 0.00 8 38 0 7 0.00 7 39 0 9 0.00 9 40 0 10 0.00 10 41 0 6 0.00 6 42 0 11 0.00 11 43 0 9 0.00 9 44 0 15 0.00 15 45 0 6 0.00 6 46 0 3 0.00 3 47 1 18 5.26 19 48 0 15 0.00 15 49 0 8 0.00 8 50 0 7 0.00 7 51 0 9 0.00 9 52 0 9 0.00 9 53 0 9 0.00 9 54 1 8 11.11 9 55 0 4 0.00 4 56 0 9 0.00 9 57 0 4 0.00 4 58 0 4 0.00 4 59 0 7 0.00 7 60 0 12 0.00 12 61 0 5 0.00 5 62 0 7 0.00 7 63 0 3 0.00 3 64 0 7 0.00 7 65 0 5 0.00 5 66 0 8 0.00 8 67 0 4 0.00 4 68 1 7 12.50 8 69 0 10 0.00 10 70 0 2 0.00 2 71 1 3 25.00 4 72 0 9 0.00 9 73 0 6 0.00 6 74 0 4 0.00 4 75 0 7 0.00 7 76 0 1 0.00 1 77 1 3 25.00 4 78 1 3 25.00 4 79 0 5 0.00 5 80 0 5 0.00 5 81 0 1 0.00 1 82 0 4 0.00 4 83 0 4 0.00 4 84 1 6 14.29 7 85 1 8 11.11 9 86 0 6 0.00 6 87 0 3 0.00 3 88 0 4 0.00 4 89 0 2 0.00 2 90 0 0 0 91 1 5 16.67 6 92 0 3 0.00 3 93 0 1 0.00 1 94 0 3 0.00 3 95 0 2 0.00 2 96 0 1 0.00 1 97 0 8 0.00 8 98 0 4 0.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 9 18.18 11 2 6 4 60.00 10 3 1 6 14.29 7 4 0 6 0.00 6 5 0 11 0.00 11 6 0 19 0.00 19 7 0 23 0.00 23 8 0 29 0.00 29 9 0 30 0.00 30 10 0 30 0.00 30 11 0 22 0.00 22 12 0 24 0.00 24 13 0 36 0.00 36 14 0 26 0.00 26 15 0 35 0.00 35 16 0 35 0.00 35 17 0 29 0.00 29 18 1 23 4.17 24 19 0 17 0.00 17 20 0 21 0.00 21 21 0 19 0.00 19 22 0 26 0.00 26 23 0 21 0.00 21 24 0 19 0.00 19 25 0 17 0.00 17 26 0 23 0.00 23 27 0 21 0.00 21 28 0 30 0.00 30 29 0 17 0.00 17 30 0 15 0.00 15 31 0 17 0.00 17 32 0 14 0.00 14 33 0 26 0.00 26 34 0 22 0.00 22 35 0 21 0.00 21 36 0 20 0.00 20 37 0 10 0.00 10 38 0 27 0.00 27 39 0 21 0.00 21 40 0 17 0.00 17 41 0 15 0.00 15 42 0 13 0.00 13 43 0 25 0.00 25 44 0 16 0.00 16 45 1 16 5.88 17 46 0 12 0.00 12 47 0 21 0.00 21 48 0 21 0.00 21 49 0 17 0.00 17 50 0 13 0.00 13 51 1 13 7.14 14 52 0 19 0.00 19 53 0 12 0.00 12 54 0 11 0.00 11 55 0 15 0.00 15 56 0 14 0.00 14 57 0 12 0.00 12 58 0 14 0.00 14 59 0 8 0.00 8 60 0 8 0.00 8 61 1 11 8.33 12 62 0 12 0.00 12 63 0 12 0.00 12 64 0 15 0.00 15 65 0 7 0.00 7 66 0 4 0.00 4 67 0 11 0.00 11 68 0 10 0.00 10 69 0 12 0.00 12 70 0 16 0.00 16 71 0 13 0.00 13 72 0 12 0.00 12 73 1 13 7.14 14 74 0 14 0.00 14 75 0 12 0.00 12 76 0 8 0.00 8 77 0 8 0.00 8 78 0 18 0.00 18 79 0 11 0.00 11 80 0 14 0.00 14 81 1 9 10.00 10 82 0 12 0.00 12 83 0 12 0.00 12 84 1 14 6.67 15 85 0 8 0.00 8 86 0 9 0.00 9 87 0 16 0.00 16 88 0 13 0.00 13 89 0 10 0.00 10 90 0 6 0.00 6 91 0 9 0.00 9 92 0 16 0.00 16 93 1 11 8.33 12 94 0 9 0.00 9 95 0 8 0.00 8 96 0 11 0.00 11 97 0 5 0.00 5 98 0 6 0.00 6