CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 52 5.45 55 2 1 56 1.75 57 3 0 58 0.00 58 4 1 42 2.33 43 5 0 28 0.00 28 6 0 25 0.00 25 7 0 31 0.00 31 8 0 26 0.00 26 9 0 26 0.00 26 10 0 41 0.00 41 11 0 26 0.00 26 12 0 32 0.00 32 13 0 22 0.00 22 14 0 29 0.00 29 15 0 28 0.00 28 16 0 22 0.00 22 17 0 28 0.00 28 18 1 37 2.63 38 19 1 35 2.78 36 20 0 39 0.00 39 21 1 30 3.23 31 22 1 19 5.00 20 23 0 34 0.00 34 24 0 26 0.00 26 25 0 30 0.00 30 26 0 30 0.00 30 27 0 30 0.00 30 28 1 31 3.12 32 29 0 24 0.00 24 30 0 28 0.00 28 31 2 35 5.41 37 32 0 22 0.00 22 33 0 29 0.00 29 34 0 23 0.00 23 35 0 34 0.00 34 36 0 34 0.00 34 37 0 42 0.00 42 38 0 29 0.00 29 39 0 39 0.00 39 40 3 28 9.68 31 41 0 20 0.00 20 42 1 31 3.12 32 43 0 32 0.00 32 44 0 22 0.00 22 45 0 24 0.00 24 46 1 19 5.00 20 47 0 26 0.00 26 48 0 31 0.00 31 49 0 30 0.00 30 50 1 33 2.94 34 51 0 34 0.00 34 52 0 23 0.00 23 53 1 29 3.33 30 54 1 29 3.33 30 55 1 21 4.55 22 56 0 22 0.00 22 57 0 27 0.00 27 58 1 25 3.85 26 59 1 33 2.94 34 60 1 17 5.56 18 61 1 28 3.45 29 62 1 33 2.94 34 63 0 22 0.00 22 64 1 20 4.76 21 65 1 18 5.26 19 66 0 31 0.00 31 67 1 19 5.00 20 68 0 25 0.00 25 69 0 21 0.00 21 70 1 18 5.26 19 71 0 25 0.00 25 72 0 15 0.00 15 73 0 19 0.00 19 74 0 20 0.00 20 75 0 29 0.00 29 76 0 13 0.00 13 77 0 15 0.00 15 78 0 19 0.00 19 79 0 21 0.00 21 80 0 19 0.00 19 81 1 25 3.85 26 82 2 10 16.67 12 83 1 26 3.70 27 84 0 19 0.00 19 85 1 21 4.55 22 86 0 14 0.00 14 87 0 15 0.00 15 88 1 17 5.56 18 89 0 14 0.00 14 90 0 10 0.00 10 91 0 16 0.00 16 92 0 17 0.00 17 93 0 17 0.00 17 94 0 13 0.00 13 95 0 11 0.00 11 96 0 7 0.00 7 97 0 15 0.00 15 98 1 13 7.14 14 99 0 16 0.00 16 100 0 14 0.00 14 101 0 16 0.00 16 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 24 24 50.00 48 2 29 22 56.86 51 3 14 22 38.89 36 4 2 27 6.90 29 5 2 28 6.67 30 6 3 9 25.00 12 7 1 32 3.03 33 8 0 25 0.00 25 9 1 38 2.56 39 10 0 20 0.00 20 11 0 34 0.00 34 12 0 30 0.00 30 13 0 33 0.00 33 14 0 33 0.00 33 15 0 27 0.00 27 16 0 34 0.00 34 17 0 40 0.00 40 18 2 24 7.69 26 19 0 15 0.00 15 20 2 34 5.56 36 21 0 30 0.00 30 22 1 35 2.78 36 23 0 33 0.00 33 24 1 22 4.35 23 25 0 37 0.00 37 26 0 32 0.00 32 27 3 38 7.32 41 28 0 35 0.00 35 29 2 44 4.35 46 30 1 35 2.78 36 31 0 26 0.00 26 32 1 30 3.23 31 33 1 33 2.94 34 34 0 30 0.00 30 35 0 32 0.00 32 36 0 42 0.00 42 37 0 30 0.00 30 38 0 22 0.00 22 39 0 20 0.00 20 40 1 29 3.33 30 41 0 39 0.00 39 42 0 28 0.00 28 43 1 28 3.45 29 44 0 27 0.00 27 45 0 27 0.00 27 46 2 22 8.33 24 47 0 25 0.00 25 48 1 26 3.70 27 49 0 26 0.00 26 50 0 26 0.00 26 51 0 18 0.00 18 52 1 28 3.45 29 53 0 23 0.00 23 54 1 25 3.85 26 55 2 26 7.14 28 56 1 30 3.23 31 57 1 24 4.00 25 58 0 32 0.00 32 59 1 20 4.76 21 60 0 32 0.00 32 61 0 30 0.00 30 62 1 24 4.00 25 63 1 26 3.70 27 64 2 20 9.09 22 65 2 21 8.70 23 66 0 14 0.00 14 67 1 32 3.03 33 68 0 15 0.00 15 69 1 27 3.57 28 70 0 27 0.00 27 71 0 24 0.00 24 72 0 27 0.00 27 73 0 19 0.00 19 74 0 24 0.00 24 75 0 21 0.00 21 76 0 18 0.00 18 77 1 16 5.88 17 78 0 23 0.00 23 79 0 25 0.00 25 80 0 14 0.00 14 81 0 21 0.00 21 82 0 21 0.00 21 83 0 27 0.00 27 84 0 12 0.00 12 85 0 14 0.00 14 86 1 14 6.67 15 87 0 20 0.00 20 88 0 15 0.00 15 89 2 10 16.67 12 90 1 13 7.14 14 91 0 21 0.00 21 92 0 12 0.00 12 93 1 12 7.69 13 94 0 12 0.00 12 95 0 19 0.00 19 96 0 20 0.00 20 97 0 16 0.00 16 98 1 14 6.67 15 99 1 5 16.67 6 100 0 7 0.00 7 101 0 7 0.00 7 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9 8 52.94 17 2 4 12 25.00 16 3 3 28 9.68 31 4 1 17 5.56 18 5 2 37 5.13 39 6 1 54 1.82 55 7 0 42 0.00 42 8 0 45 0.00 45 9 0 51 0.00 51 10 0 34 0.00 34 11 0 42 0.00 42 12 0 54 0.00 54 13 1 50 1.96 51 14 1 46 2.13 47 15 0 49 0.00 49 16 0 54 0.00 54 17 0 43 0.00 43 18 0 44 0.00 44 19 0 48 0.00 48 20 0 47 0.00 47 21 0 54 0.00 54 22 1 48 2.04 49 23 0 65 0.00 65 24 0 52 0.00 52 25 0 47 0.00 47 26 1 52 1.89 53 27 0 49 0.00 49 28 0 53 0.00 53 29 0 59 0.00 59 30 0 39 0.00 39 31 0 44 0.00 44 32 0 54 0.00 54 33 1 49 2.00 50 34 0 51 0.00 51 35 0 47 0.00 47 36 0 50 0.00 50 37 0 44 0.00 44 38 0 44 0.00 44 39 1 39 2.50 40 40 0 43 0.00 43 41 1 40 2.44 41 42 0 44 0.00 44 43 0 31 0.00 31 44 0 45 0.00 45 45 0 51 0.00 51 46 0 48 0.00 48 47 0 61 0.00 61 48 0 43 0.00 43 49 0 39 0.00 39 50 0 39 0.00 39 51 0 44 0.00 44 52 1 46 2.13 47 53 0 42 0.00 42 54 0 31 0.00 31 55 0 36 0.00 36 56 0 40 0.00 40 57 0 46 0.00 46 58 0 38 0.00 38 59 0 35 0.00 35 60 0 34 0.00 34 61 0 42 0.00 42 62 0 37 0.00 37 63 0 44 0.00 44 64 0 51 0.00 51 65 0 29 0.00 29 66 0 37 0.00 37 67 0 34 0.00 34 68 0 38 0.00 38 69 1 27 3.57 28 70 0 39 0.00 39 71 1 36 2.70 37 72 0 36 0.00 36 73 0 33 0.00 33 74 0 33 0.00 33 75 0 32 0.00 32 76 0 30 0.00 30 77 1 34 2.86 35 78 0 28 0.00 28 79 0 28 0.00 28 80 1 32 3.03 33 81 1 35 2.78 36 82 0 32 0.00 32 83 0 22 0.00 22 84 1 19 5.00 20 85 1 20 4.76 21 86 1 20 4.76 21 87 0 24 0.00 24 88 0 22 0.00 22 89 0 22 0.00 22 90 1 23 4.17 24 91 0 17 0.00 17 92 0 23 0.00 23 93 0 17 0.00 17 94 0 18 0.00 18 95 0 15 0.00 15 96 0 18 0.00 18 97 1 11 8.33 12 98 1 21 4.55 22 99 0 10 0.00 10 100 0 16 0.00 16 101 0 20 0.00 20 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 10 23.08 13 2 3 10 23.08 13 3 1 8 11.11 9 4 2 12 14.29 14 5 0 28 0.00 28 6 0 12 0.00 12 7 0 5 0.00 5 8 0 15 0.00 15 9 0 14 0.00 14 10 0 11 0.00 11 11 0 10 0.00 10 12 0 7 0.00 7 13 0 6 0.00 6 14 0 10 0.00 10 15 0 13 0.00 13 16 0 10 0.00 10 17 0 8 0.00 8 18 0 5 0.00 5 19 0 10 0.00 10 20 0 10 0.00 10 21 0 10 0.00 10 22 0 1 0.00 1 23 0 8 0.00 8 24 0 6 0.00 6 25 0 11 0.00 11 26 0 6 0.00 6 27 0 9 0.00 9 28 0 7 0.00 7 29 0 5 0.00 5 30 1 8 11.11 9 31 0 12 0.00 12 32 0 5 0.00 5 33 0 4 0.00 4 34 0 8 0.00 8 35 0 9 0.00 9 36 0 6 0.00 6 37 0 9 0.00 9 38 0 8 0.00 8 39 0 7 0.00 7 40 0 6 0.00 6 41 0 6 0.00 6 42 0 5 0.00 5 43 0 4 0.00 4 44 0 5 0.00 5 45 0 2 0.00 2 46 0 6 0.00 6 47 0 5 0.00 5 48 0 11 0.00 11 49 0 3 0.00 3 50 0 4 0.00 4 51 0 0 0 52 0 4 0.00 4 53 0 3 0.00 3 54 0 8 0.00 8 55 0 8 0.00 8 56 0 5 0.00 5 57 0 1 0.00 1 58 0 3 0.00 3 59 0 8 0.00 8 60 0 1 0.00 1 61 0 0 0 62 0 3 0.00 3 63 0 4 0.00 4 64 0 9 0.00 9 65 0 5 0.00 5 66 0 4 0.00 4 67 0 3 0.00 3 68 0 2 0.00 2 69 0 6 0.00 6 70 0 3 0.00 3 71 0 4 0.00 4 72 0 5 0.00 5 73 0 2 0.00 2 74 0 1 0.00 1 75 0 4 0.00 4 76 0 1 0.00 1 77 0 5 0.00 5 78 0 1 0.00 1 79 0 0 0 80 1 9 10.00 10 81 0 3 0.00 3 82 0 4 0.00 4 83 0 5 0.00 5 84 0 1 0.00 1 85 0 3 0.00 3 86 0 1 0.00 1 87 0 2 0.00 2 88 0 4 0.00 4 89 0 2 0.00 2 90 0 4 0.00 4 91 0 2 0.00 2 92 0 3 0.00 3 93 0 1 0.00 1 94 0 3 0.00 3 95 0 5 0.00 5 96 0 4 0.00 4 97 0 6 0.00 6 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 2 0.00 2 2 2 11 15.38 13 3 1 18 5.26 19 4 3 10 23.08 13 5 0 16 0.00 16 6 0 22 0.00 22 7 1 13 7.14 14 8 0 13 0.00 13 9 0 13 0.00 13 10 0 12 0.00 12 11 0 7 0.00 7 12 0 11 0.00 11 13 0 8 0.00 8 14 0 7 0.00 7 15 0 18 0.00 18 16 0 9 0.00 9 17 1 10 9.09 11 18 0 8 0.00 8 19 0 9 0.00 9 20 0 6 0.00 6 21 0 6 0.00 6 22 0 8 0.00 8 23 0 5 0.00 5 24 0 7 0.00 7 25 0 5 0.00 5 26 0 7 0.00 7 27 0 7 0.00 7 28 0 12 0.00 12 29 1 7 12.50 8 30 0 4 0.00 4 31 0 4 0.00 4 32 0 5 0.00 5 33 0 8 0.00 8 34 0 8 0.00 8 35 0 8 0.00 8 36 0 7 0.00 7 37 0 6 0.00 6 38 0 8 0.00 8 39 0 4 0.00 4 40 0 11 0.00 11 41 0 6 0.00 6 42 0 7 0.00 7 43 0 5 0.00 5 44 0 5 0.00 5 45 0 9 0.00 9 46 0 4 0.00 4 47 0 7 0.00 7 48 0 6 0.00 6 49 0 7 0.00 7 50 0 4 0.00 4 51 0 7 0.00 7 52 1 5 16.67 6 53 0 4 0.00 4 54 0 6 0.00 6 55 0 7 0.00 7 56 0 3 0.00 3 57 0 7 0.00 7 58 0 5 0.00 5 59 0 7 0.00 7 60 0 7 0.00 7 61 0 5 0.00 5 62 1 2 33.33 3 63 0 1 0.00 1 64 0 1 0.00 1 65 0 5 0.00 5 66 0 5 0.00 5 67 0 3 0.00 3 68 0 7 0.00 7 69 0 6 0.00 6 70 0 8 0.00 8 71 0 0 0 72 0 6 0.00 6 73 0 4 0.00 4 74 0 6 0.00 6 75 0 2 0.00 2 76 0 5 0.00 5 77 0 2 0.00 2 78 0 8 0.00 8 79 0 2 0.00 2 80 0 2 0.00 2 81 0 2 0.00 2 82 0 3 0.00 3 83 0 5 0.00 5 84 0 3 0.00 3 85 0 5 0.00 5 86 0 2 0.00 2 87 0 5 0.00 5 88 0 2 0.00 2 89 0 6 0.00 6 90 0 1 0.00 1 91 1 2 33.33 3 92 0 3 0.00 3 93 0 4 0.00 4 94 0 2 0.00 2 95 0 1 0.00 1 96 0 1 0.00 1 97 0 5 0.00 5 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 7 12.50 8 2 0 9 0.00 9 3 2 4 33.33 6 4 2 5 28.57 7 5 0 6 0.00 6 6 0 13 0.00 13 7 0 14 0.00 14 8 0 19 0.00 19 9 0 19 0.00 19 10 0 24 0.00 24 11 1 23 4.17 24 12 0 13 0.00 13 13 0 19 0.00 19 14 0 26 0.00 26 15 0 19 0.00 19 16 0 17 0.00 17 17 0 23 0.00 23 18 0 17 0.00 17 19 0 16 0.00 16 20 0 13 0.00 13 21 0 11 0.00 11 22 0 16 0.00 16 23 0 11 0.00 11 24 0 14 0.00 14 25 0 8 0.00 8 26 0 16 0.00 16 27 0 10 0.00 10 28 0 15 0.00 15 29 0 16 0.00 16 30 0 8 0.00 8 31 0 9 0.00 9 32 0 8 0.00 8 33 0 13 0.00 13 34 0 18 0.00 18 35 0 7 0.00 7 36 0 12 0.00 12 37 0 10 0.00 10 38 0 18 0.00 18 39 0 16 0.00 16 40 0 12 0.00 12 41 0 9 0.00 9 42 0 10 0.00 10 43 0 8 0.00 8 44 0 10 0.00 10 45 0 11 0.00 11 46 0 12 0.00 12 47 0 13 0.00 13 48 0 11 0.00 11 49 0 8 0.00 8 50 0 11 0.00 11 51 0 10 0.00 10 52 0 8 0.00 8 53 0 7 0.00 7 54 0 11 0.00 11 55 0 12 0.00 12 56 0 8 0.00 8 57 0 11 0.00 11 58 0 9 0.00 9 59 1 5 16.67 6 60 0 9 0.00 9 61 0 10 0.00 10 62 0 8 0.00 8 63 0 13 0.00 13 64 0 16 0.00 16 65 0 9 0.00 9 66 0 8 0.00 8 67 0 8 0.00 8 68 0 9 0.00 9 69 0 6 0.00 6 70 0 8 0.00 8 71 0 9 0.00 9 72 0 4 0.00 4 73 0 6 0.00 6 74 0 5 0.00 5 75 0 5 0.00 5 76 0 4 0.00 4 77 0 9 0.00 9 78 0 8 0.00 8 79 0 4 0.00 4 80 0 13 0.00 13 81 0 3 0.00 3 82 1 5 16.67 6 83 0 2 0.00 2 84 0 4 0.00 4 85 0 5 0.00 5 86 0 7 0.00 7 87 0 8 0.00 8 88 0 3 0.00 3 89 0 4 0.00 4 90 0 3 0.00 3 91 0 4 0.00 4 92 0 4 0.00 4 93 0 8 0.00 8 94 0 5 0.00 5 95 0 5 0.00 5 96 0 4 0.00 4 97 0 2 0.00 2 98 0 5 0.00 5