/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-193_S22_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
532
Pairs without alignments under any condition
99468
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19364
Methylated C's in CpG context
79
Methylated C's in CHG context
239
Methylated C's in CHH context
84
Methylated C's in Unknown context
5
Unmethylated C's in CpG context
5478
Unmethylated C's in CHG context
5399
Unmethylated C's in CHH context
8085
Unmethylated C's in Unknown context
5
Percentage methylation (CpG context)
1.4%
Percentage methylation (CHG context)
4.2%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
352
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
180
original bottom strand
Deduplication
Alignments analysed
532
Unique alignments
486
Duplicates removed
46
Duplicated alignments were found at 29 different positions
