CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 76 2.56 78 2 1 65 1.52 66 3 0 60 0.00 60 4 2 34 5.56 36 5 0 44 0.00 44 6 0 18 0.00 18 7 1 29 3.33 30 8 0 38 0.00 38 9 0 40 0.00 40 10 1 31 3.12 32 11 0 24 0.00 24 12 1 35 2.78 36 13 0 19 0.00 19 14 1 26 3.70 27 15 0 32 0.00 32 16 0 25 0.00 25 17 0 27 0.00 27 18 1 40 2.44 41 19 1 26 3.70 27 20 0 35 0.00 35 21 1 50 1.96 51 22 0 34 0.00 34 23 0 24 0.00 24 24 0 36 0.00 36 25 0 33 0.00 33 26 0 36 0.00 36 27 0 34 0.00 34 28 0 26 0.00 26 29 0 29 0.00 29 30 0 32 0.00 32 31 1 23 4.17 24 32 0 41 0.00 41 33 0 28 0.00 28 34 0 32 0.00 32 35 0 33 0.00 33 36 1 28 3.45 29 37 0 36 0.00 36 38 0 33 0.00 33 39 0 42 0.00 42 40 1 29 3.33 30 41 0 27 0.00 27 42 0 32 0.00 32 43 0 20 0.00 20 44 0 30 0.00 30 45 0 21 0.00 21 46 0 25 0.00 25 47 0 28 0.00 28 48 1 22 4.35 23 49 1 36 2.70 37 50 0 35 0.00 35 51 1 21 4.55 22 52 0 25 0.00 25 53 1 27 3.57 28 54 0 25 0.00 25 55 2 25 7.41 27 56 0 17 0.00 17 57 2 27 6.90 29 58 0 25 0.00 25 59 0 32 0.00 32 60 0 24 0.00 24 61 0 28 0.00 28 62 0 17 0.00 17 63 0 27 0.00 27 64 1 25 3.85 26 65 0 17 0.00 17 66 0 18 0.00 18 67 0 19 0.00 19 68 0 18 0.00 18 69 0 21 0.00 21 70 0 18 0.00 18 71 0 20 0.00 20 72 0 23 0.00 23 73 0 22 0.00 22 74 1 25 3.85 26 75 0 18 0.00 18 76 0 20 0.00 20 77 0 21 0.00 21 78 0 15 0.00 15 79 0 21 0.00 21 80 0 14 0.00 14 81 1 29 3.33 30 82 1 21 4.55 22 83 2 19 9.52 21 84 1 17 5.56 18 85 1 21 4.55 22 86 0 15 0.00 15 87 0 20 0.00 20 88 1 21 4.55 22 89 1 13 7.14 14 90 1 12 7.69 13 91 0 15 0.00 15 92 0 14 0.00 14 93 0 15 0.00 15 94 1 11 8.33 12 95 0 11 0.00 11 96 0 14 0.00 14 97 0 9 0.00 9 98 1 19 5.00 20 99 0 15 0.00 15 100 0 18 0.00 18 101 1 15 6.25 16 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 31 23 57.41 54 2 24 10 70.59 34 3 7 23 23.33 30 4 3 34 8.11 37 5 0 29 0.00 29 6 1 26 3.70 27 7 2 24 7.69 26 8 2 36 5.26 38 9 1 21 4.55 22 10 0 19 0.00 19 11 3 32 8.57 35 12 1 38 2.56 39 13 0 32 0.00 32 14 1 30 3.23 31 15 0 25 0.00 25 16 0 30 0.00 30 17 2 41 4.65 43 18 1 28 3.45 29 19 0 29 0.00 29 20 0 34 0.00 34 21 0 31 0.00 31 22 0 30 0.00 30 23 2 34 5.56 36 24 2 28 6.67 30 25 1 33 2.94 34 26 0 39 0.00 39 27 0 42 0.00 42 28 1 37 2.63 38 29 1 39 2.50 40 30 3 36 7.69 39 31 0 26 0.00 26 32 0 33 0.00 33 33 1 25 3.85 26 34 2 40 4.76 42 35 1 34 2.86 35 36 1 37 2.63 38 37 1 35 2.78 36 38 1 25 3.85 26 39 1 28 3.45 29 40 0 28 0.00 28 41 1 30 3.23 31 42 0 36 0.00 36 43 0 29 0.00 29 44 0 26 0.00 26 45 1 28 3.45 29 46 0 35 0.00 35 47 0 31 0.00 31 48 1 35 2.78 36 49 0 30 0.00 30 50 0 21 0.00 21 51 1 27 3.57 28 52 0 29 0.00 29 53 0 33 0.00 33 54 2 35 5.41 37 55 0 29 0.00 29 56 2 21 8.70 23 57 0 26 0.00 26 58 1 22 4.35 23 59 0 19 0.00 19 60 0 20 0.00 20 61 0 30 0.00 30 62 1 19 5.00 20 63 0 26 0.00 26 64 1 20 4.76 21 65 0 21 0.00 21 66 1 15 6.25 16 67 1 20 4.76 21 68 1 24 4.00 25 69 0 18 0.00 18 70 0 23 0.00 23 71 0 25 0.00 25 72 1 22 4.35 23 73 0 22 0.00 22 74 0 30 0.00 30 75 0 20 0.00 20 76 0 28 0.00 28 77 0 17 0.00 17 78 0 15 0.00 15 79 0 17 0.00 17 80 1 24 4.00 25 81 0 22 0.00 22 82 0 21 0.00 21 83 0 14 0.00 14 84 0 11 0.00 11 85 2 14 12.50 16 86 0 9 0.00 9 87 0 13 0.00 13 88 0 17 0.00 17 89 0 11 0.00 11 90 2 17 10.53 19 91 0 10 0.00 10 92 1 15 6.25 16 93 2 17 10.53 19 94 0 18 0.00 18 95 0 11 0.00 11 96 0 13 0.00 13 97 0 13 0.00 13 98 0 13 0.00 13 99 1 6 14.29 7 100 0 5 0.00 5 101 0 10 0.00 10 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8 22 26.67 30 2 3 13 18.75 16 3 3 26 10.34 29 4 1 32 3.03 33 5 2 37 5.13 39 6 0 32 0.00 32 7 1 55 1.79 56 8 0 52 0.00 52 9 1 48 2.04 49 10 0 52 0.00 52 11 1 36 2.70 37 12 2 48 4.00 50 13 0 56 0.00 56 14 2 55 3.51 57 15 0 45 0.00 45 16 0 59 0.00 59 17 2 63 3.08 65 18 0 67 0.00 67 19 0 62 0.00 62 20 1 43 2.27 44 21 0 41 0.00 41 22 0 60 0.00 60 23 0 43 0.00 43 24 0 42 0.00 42 25 0 55 0.00 55 26 0 52 0.00 52 27 0 54 0.00 54 28 0 43 0.00 43 29 0 48 0.00 48 30 0 38 0.00 38 31 0 52 0.00 52 32 1 68 1.45 69 33 0 60 0.00 60 34 0 49 0.00 49 35 1 46 2.13 47 36 0 44 0.00 44 37 0 41 0.00 41 38 1 40 2.44 41 39 1 52 1.89 53 40 0 50 0.00 50 41 0 45 0.00 45 42 0 40 0.00 40 43 1 44 2.22 45 44 1 49 2.00 50 45 0 47 0.00 47 46 0 63 0.00 63 47 0 52 0.00 52 48 0 43 0.00 43 49 0 43 0.00 43 50 1 53 1.85 54 51 1 44 2.22 45 52 0 41 0.00 41 53 0 41 0.00 41 54 1 35 2.78 36 55 1 29 3.33 30 56 0 45 0.00 45 57 0 48 0.00 48 58 0 33 0.00 33 59 0 45 0.00 45 60 0 41 0.00 41 61 0 36 0.00 36 62 0 37 0.00 37 63 0 50 0.00 50 64 0 29 0.00 29 65 0 33 0.00 33 66 0 51 0.00 51 67 0 31 0.00 31 68 1 27 3.57 28 69 0 29 0.00 29 70 1 40 2.44 41 71 0 35 0.00 35 72 0 44 0.00 44 73 0 27 0.00 27 74 0 35 0.00 35 75 0 29 0.00 29 76 1 32 3.03 33 77 0 37 0.00 37 78 0 40 0.00 40 79 3 46 6.12 49 80 0 29 0.00 29 81 0 27 0.00 27 82 0 25 0.00 25 83 0 21 0.00 21 84 0 30 0.00 30 85 0 25 0.00 25 86 0 21 0.00 21 87 1 21 4.55 22 88 0 23 0.00 23 89 0 23 0.00 23 90 0 23 0.00 23 91 0 21 0.00 21 92 0 23 0.00 23 93 0 22 0.00 22 94 0 21 0.00 21 95 0 20 0.00 20 96 0 21 0.00 21 97 0 26 0.00 26 98 0 17 0.00 17 99 0 14 0.00 14 100 0 12 0.00 12 101 1 21 4.55 22 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 13 18.75 16 2 1 10 9.09 11 3 2 15 11.76 17 4 0 8 0.00 8 5 1 19 5.00 20 6 0 9 0.00 9 7 0 11 0.00 11 8 0 11 0.00 11 9 0 12 0.00 12 10 0 14 0.00 14 11 0 12 0.00 12 12 0 11 0.00 11 13 0 10 0.00 10 14 0 8 0.00 8 15 0 4 0.00 4 16 0 14 0.00 14 17 0 10 0.00 10 18 0 15 0.00 15 19 0 15 0.00 15 20 0 12 0.00 12 21 0 8 0.00 8 22 0 9 0.00 9 23 0 6 0.00 6 24 0 7 0.00 7 25 0 3 0.00 3 26 0 12 0.00 12 27 0 8 0.00 8 28 0 9 0.00 9 29 0 7 0.00 7 30 0 7 0.00 7 31 0 16 0.00 16 32 0 11 0.00 11 33 0 6 0.00 6 34 0 6 0.00 6 35 0 4 0.00 4 36 0 7 0.00 7 37 0 5 0.00 5 38 0 7 0.00 7 39 0 7 0.00 7 40 1 6 14.29 7 41 0 6 0.00 6 42 0 7 0.00 7 43 0 8 0.00 8 44 0 2 0.00 2 45 0 8 0.00 8 46 0 3 0.00 3 47 0 6 0.00 6 48 1 6 14.29 7 49 0 9 0.00 9 50 1 6 14.29 7 51 0 3 0.00 3 52 0 6 0.00 6 53 0 2 0.00 2 54 0 6 0.00 6 55 0 5 0.00 5 56 0 3 0.00 3 57 0 5 0.00 5 58 0 4 0.00 4 59 0 3 0.00 3 60 0 2 0.00 2 61 0 4 0.00 4 62 0 5 0.00 5 63 0 2 0.00 2 64 0 7 0.00 7 65 0 1 0.00 1 66 0 2 0.00 2 67 0 5 0.00 5 68 0 3 0.00 3 69 0 2 0.00 2 70 0 2 0.00 2 71 0 0 0 72 0 7 0.00 7 73 0 0 0 74 0 5 0.00 5 75 0 1 0.00 1 76 0 4 0.00 4 77 0 3 0.00 3 78 0 1 0.00 1 79 0 2 0.00 2 80 0 7 0.00 7 81 0 4 0.00 4 82 0 5 0.00 5 83 0 3 0.00 3 84 0 1 0.00 1 85 0 1 0.00 1 86 0 4 0.00 4 87 0 5 0.00 5 88 0 5 0.00 5 89 0 1 0.00 1 90 0 2 0.00 2 91 0 3 0.00 3 92 0 4 0.00 4 93 0 2 0.00 2 94 0 3 0.00 3 95 0 1 0.00 1 96 0 2 0.00 2 97 0 3 0.00 3 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 14 6.67 15 2 0 7 0.00 7 3 2 13 13.33 15 4 1 4 20.00 5 5 0 11 0.00 11 6 1 21 4.55 22 7 0 7 0.00 7 8 0 14 0.00 14 9 0 7 0.00 7 10 0 9 0.00 9 11 0 11 0.00 11 12 0 13 0.00 13 13 0 8 0.00 8 14 0 11 0.00 11 15 0 17 0.00 17 16 0 11 0.00 11 17 0 11 0.00 11 18 0 7 0.00 7 19 1 5 16.67 6 20 0 13 0.00 13 21 0 2 0.00 2 22 0 12 0.00 12 23 0 8 0.00 8 24 0 11 0.00 11 25 1 2 33.33 3 26 0 13 0.00 13 27 0 9 0.00 9 28 0 11 0.00 11 29 0 7 0.00 7 30 0 6 0.00 6 31 0 10 0.00 10 32 0 12 0.00 12 33 0 5 0.00 5 34 0 6 0.00 6 35 0 4 0.00 4 36 0 11 0.00 11 37 0 4 0.00 4 38 0 4 0.00 4 39 0 8 0.00 8 40 0 12 0.00 12 41 0 8 0.00 8 42 0 4 0.00 4 43 0 5 0.00 5 44 0 10 0.00 10 45 0 6 0.00 6 46 0 7 0.00 7 47 0 6 0.00 6 48 0 14 0.00 14 49 0 13 0.00 13 50 0 3 0.00 3 51 0 7 0.00 7 52 1 6 14.29 7 53 0 5 0.00 5 54 1 4 20.00 5 55 0 4 0.00 4 56 0 6 0.00 6 57 0 3 0.00 3 58 0 3 0.00 3 59 0 5 0.00 5 60 0 3 0.00 3 61 0 7 0.00 7 62 0 6 0.00 6 63 0 3 0.00 3 64 0 4 0.00 4 65 0 7 0.00 7 66 0 4 0.00 4 67 1 3 25.00 4 68 1 5 16.67 6 69 0 6 0.00 6 70 0 5 0.00 5 71 0 4 0.00 4 72 0 4 0.00 4 73 0 7 0.00 7 74 0 5 0.00 5 75 0 4 0.00 4 76 0 3 0.00 3 77 0 2 0.00 2 78 0 4 0.00 4 79 0 3 0.00 3 80 0 1 0.00 1 81 0 5 0.00 5 82 0 2 0.00 2 83 0 4 0.00 4 84 0 4 0.00 4 85 0 6 0.00 6 86 0 2 0.00 2 87 0 3 0.00 3 88 0 0 0 89 0 7 0.00 7 90 0 1 0.00 1 91 0 2 0.00 2 92 0 2 0.00 2 93 0 5 0.00 5 94 0 0 0 95 0 1 0.00 1 96 0 2 0.00 2 97 0 2 0.00 2 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 7 12.50 8 2 3 7 30.00 10 3 2 8 20.00 10 4 0 6 0.00 6 5 0 10 0.00 10 6 0 12 0.00 12 7 0 24 0.00 24 8 0 18 0.00 18 9 0 15 0.00 15 10 1 25 3.85 26 11 0 21 0.00 21 12 0 25 0.00 25 13 0 21 0.00 21 14 0 16 0.00 16 15 0 20 0.00 20 16 0 16 0.00 16 17 0 18 0.00 18 18 0 10 0.00 10 19 0 8 0.00 8 20 0 15 0.00 15 21 0 12 0.00 12 22 0 17 0.00 17 23 0 18 0.00 18 24 0 18 0.00 18 25 0 18 0.00 18 26 0 20 0.00 20 27 0 5 0.00 5 28 0 26 0.00 26 29 0 13 0.00 13 30 0 5 0.00 5 31 0 11 0.00 11 32 0 13 0.00 13 33 0 11 0.00 11 34 0 11 0.00 11 35 0 11 0.00 11 36 0 7 0.00 7 37 0 13 0.00 13 38 0 20 0.00 20 39 0 15 0.00 15 40 0 7 0.00 7 41 1 10 9.09 11 42 0 12 0.00 12 43 0 19 0.00 19 44 0 11 0.00 11 45 0 13 0.00 13 46 1 6 14.29 7 47 0 15 0.00 15 48 0 7 0.00 7 49 0 12 0.00 12 50 0 12 0.00 12 51 0 10 0.00 10 52 0 12 0.00 12 53 0 11 0.00 11 54 0 13 0.00 13 55 0 13 0.00 13 56 0 13 0.00 13 57 0 11 0.00 11 58 0 10 0.00 10 59 0 7 0.00 7 60 0 10 0.00 10 61 0 7 0.00 7 62 0 2 0.00 2 63 0 8 0.00 8 64 0 9 0.00 9 65 0 10 0.00 10 66 0 5 0.00 5 67 0 9 0.00 9 68 0 11 0.00 11 69 0 7 0.00 7 70 0 11 0.00 11 71 0 5 0.00 5 72 0 8 0.00 8 73 0 8 0.00 8 74 0 4 0.00 4 75 0 6 0.00 6 76 0 7 0.00 7 77 0 9 0.00 9 78 1 10 9.09 11 79 0 7 0.00 7 80 0 6 0.00 6 81 0 3 0.00 3 82 0 8 0.00 8 83 0 5 0.00 5 84 0 6 0.00 6 85 1 6 14.29 7 86 0 7 0.00 7 87 0 11 0.00 11 88 0 4 0.00 4 89 0 4 0.00 4 90 0 3 0.00 3 91 0 2 0.00 2 92 0 5 0.00 5 93 0 2 0.00 2 94 0 4 0.00 4 95 0 3 0.00 3 96 0 4 0.00 4 97 0 3 0.00 3 98 0 7 0.00 7