/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-188_S21_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
560
Pairs without alignments under any condition
99440
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19403
Methylated C's in CpG context
84
Methylated C's in CHG context
229
Methylated C's in CHH context
87
Methylated C's in Unknown context
13
Unmethylated C's in CpG context
5516
Unmethylated C's in CHG context
5264
Unmethylated C's in CHH context
8223
Unmethylated C's in Unknown context
8
Percentage methylation (CpG context)
1.5%
Percentage methylation (CHG context)
4.2%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
379
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
181
original bottom strand
Deduplication
Alignments analysed
560
Unique alignments
530
Duplicates removed
30
Duplicated alignments were found at 26 different positions
