EPI-187_S20_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 369 lines in total Total number of methylation call strings processed: 738 Final Cytosine Methylation Report ================================= Total number of C's analysed: 9684 Total methylated C's in CpG context: 41 Total methylated C's in CHG context: 99 Total methylated C's in CHH context: 45 Total C to T conversions in CpG context: 2765 Total C to T conversions in CHG context: 2683 Total C to T conversions in CHH context: 4051 C methylated in CpG context: 1.5% C methylated in CHG context: 3.6% C methylated in CHH context: 1.1%