CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 35 2.78 36 2 1 39 2.50 40 3 0 46 0.00 46 4 0 28 0.00 28 5 0 22 0.00 22 6 0 12 0.00 12 7 2 18 10.00 20 8 0 26 0.00 26 9 0 23 0.00 23 10 0 17 0.00 17 11 0 25 0.00 25 12 0 17 0.00 17 13 0 24 0.00 24 14 0 25 0.00 25 15 0 19 0.00 19 16 0 18 0.00 18 17 0 23 0.00 23 18 0 23 0.00 23 19 1 37 2.63 38 20 1 26 3.70 27 21 0 32 0.00 32 22 0 26 0.00 26 23 0 17 0.00 17 24 0 35 0.00 35 25 0 22 0.00 22 26 0 17 0.00 17 27 0 19 0.00 19 28 0 23 0.00 23 29 0 22 0.00 22 30 0 21 0.00 21 31 0 32 0.00 32 32 0 29 0.00 29 33 0 25 0.00 25 34 0 26 0.00 26 35 0 30 0.00 30 36 0 28 0.00 28 37 1 23 4.17 24 38 1 26 3.70 27 39 0 20 0.00 20 40 0 21 0.00 21 41 0 21 0.00 21 42 0 27 0.00 27 43 1 23 4.17 24 44 0 21 0.00 21 45 0 24 0.00 24 46 0 28 0.00 28 47 0 22 0.00 22 48 0 26 0.00 26 49 1 27 3.57 28 50 1 24 4.00 25 51 0 25 0.00 25 52 0 23 0.00 23 53 0 24 0.00 24 54 0 21 0.00 21 55 2 27 6.90 29 56 0 23 0.00 23 57 0 23 0.00 23 58 1 33 2.94 34 59 2 30 6.25 32 60 0 23 0.00 23 61 1 27 3.57 28 62 0 25 0.00 25 63 0 21 0.00 21 64 0 21 0.00 21 65 0 17 0.00 17 66 0 14 0.00 14 67 0 17 0.00 17 68 0 23 0.00 23 69 0 18 0.00 18 70 0 14 0.00 14 71 0 20 0.00 20 72 0 19 0.00 19 73 0 17 0.00 17 74 0 17 0.00 17 75 0 23 0.00 23 76 1 16 5.88 17 77 1 20 4.76 21 78 0 9 0.00 9 79 2 21 8.70 23 80 0 22 0.00 22 81 0 21 0.00 21 82 0 14 0.00 14 83 0 12 0.00 12 84 0 12 0.00 12 85 0 12 0.00 12 86 1 8 11.11 9 87 1 15 6.25 16 88 1 11 8.33 12 89 0 10 0.00 10 90 3 13 18.75 16 91 0 13 0.00 13 92 0 19 0.00 19 93 0 14 0.00 14 94 0 12 0.00 12 95 0 7 0.00 7 96 0 12 0.00 12 97 0 13 0.00 13 98 1 13 7.14 14 99 0 10 0.00 10 100 0 18 0.00 18 101 0 11 0.00 11 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19 14 57.58 33 2 17 13 56.67 30 3 6 19 24.00 25 4 1 26 3.70 27 5 1 24 4.00 25 6 2 11 15.38 13 7 1 27 3.57 28 8 0 25 0.00 25 9 0 19 0.00 19 10 0 27 0.00 27 11 0 34 0.00 34 12 1 17 5.56 18 13 0 23 0.00 23 14 1 23 4.17 24 15 1 20 4.76 21 16 0 26 0.00 26 17 1 25 3.85 26 18 0 24 0.00 24 19 0 17 0.00 17 20 0 28 0.00 28 21 0 28 0.00 28 22 0 23 0.00 23 23 0 27 0.00 27 24 1 23 4.17 24 25 0 24 0.00 24 26 0 24 0.00 24 27 0 26 0.00 26 28 2 23 8.00 25 29 0 24 0.00 24 30 1 26 3.70 27 31 1 23 4.17 24 32 0 24 0.00 24 33 1 23 4.17 24 34 1 21 4.55 22 35 0 24 0.00 24 36 0 27 0.00 27 37 0 29 0.00 29 38 0 21 0.00 21 39 0 24 0.00 24 40 1 27 3.57 28 41 1 31 3.12 32 42 0 27 0.00 27 43 0 17 0.00 17 44 0 28 0.00 28 45 1 23 4.17 24 46 1 18 5.26 19 47 0 29 0.00 29 48 1 16 5.88 17 49 0 25 0.00 25 50 0 22 0.00 22 51 1 17 5.56 18 52 0 26 0.00 26 53 0 25 0.00 25 54 0 24 0.00 24 55 0 29 0.00 29 56 0 18 0.00 18 57 1 23 4.17 24 58 0 22 0.00 22 59 1 21 4.55 22 60 0 20 0.00 20 61 0 28 0.00 28 62 0 16 0.00 16 63 0 25 0.00 25 64 0 18 0.00 18 65 0 15 0.00 15 66 0 18 0.00 18 67 0 27 0.00 27 68 1 16 5.88 17 69 0 25 0.00 25 70 1 21 4.55 22 71 0 26 0.00 26 72 0 19 0.00 19 73 0 10 0.00 10 74 1 15 6.25 16 75 2 15 11.76 17 76 1 19 5.00 20 77 0 13 0.00 13 78 0 19 0.00 19 79 1 20 4.76 21 80 0 19 0.00 19 81 1 17 5.56 18 82 1 13 7.14 14 83 0 17 0.00 17 84 1 18 5.26 19 85 0 14 0.00 14 86 1 10 9.09 11 87 1 17 5.56 18 88 1 14 6.67 15 89 1 12 7.69 13 90 2 15 11.76 17 91 1 10 9.09 11 92 0 13 0.00 13 93 0 15 0.00 15 94 0 10 0.00 10 95 0 19 0.00 19 96 1 11 8.33 12 97 0 10 0.00 10 98 0 8 0.00 8 99 1 4 20.00 5 100 0 8 0.00 8 101 0 15 0.00 15 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6 6 50.00 12 2 3 10 23.08 13 3 4 21 16.00 25 4 2 21 8.70 23 5 2 24 7.69 26 6 0 24 0.00 24 7 1 40 2.44 41 8 1 29 3.33 30 9 0 34 0.00 34 10 0 41 0.00 41 11 0 22 0.00 22 12 0 31 0.00 31 13 0 34 0.00 34 14 1 24 4.00 25 15 0 38 0.00 38 16 0 46 0.00 46 17 0 41 0.00 41 18 0 31 0.00 31 19 0 32 0.00 32 20 0 27 0.00 27 21 0 28 0.00 28 22 0 35 0.00 35 23 0 39 0.00 39 24 0 36 0.00 36 25 0 40 0.00 40 26 0 49 0.00 49 27 0 51 0.00 51 28 0 44 0.00 44 29 0 52 0.00 52 30 0 40 0.00 40 31 0 45 0.00 45 32 1 48 2.04 49 33 0 38 0.00 38 34 1 36 2.70 37 35 0 37 0.00 37 36 1 30 3.23 31 37 0 31 0.00 31 38 0 28 0.00 28 39 0 41 0.00 41 40 0 32 0.00 32 41 0 29 0.00 29 42 0 29 0.00 29 43 1 34 2.86 35 44 1 37 2.63 38 45 0 49 0.00 49 46 0 47 0.00 47 47 0 36 0.00 36 48 0 39 0.00 39 49 1 34 2.86 35 50 0 29 0.00 29 51 0 32 0.00 32 52 1 29 3.33 30 53 0 44 0.00 44 54 0 38 0.00 38 55 1 39 2.50 40 56 0 34 0.00 34 57 1 30 3.23 31 58 0 38 0.00 38 59 0 25 0.00 25 60 0 39 0.00 39 61 0 31 0.00 31 62 0 33 0.00 33 63 0 40 0.00 40 64 1 36 2.70 37 65 0 37 0.00 37 66 1 38 2.56 39 67 0 26 0.00 26 68 0 33 0.00 33 69 0 36 0.00 36 70 0 24 0.00 24 71 0 31 0.00 31 72 0 26 0.00 26 73 0 26 0.00 26 74 0 28 0.00 28 75 0 27 0.00 27 76 0 17 0.00 17 77 1 34 2.86 35 78 0 34 0.00 34 79 0 33 0.00 33 80 0 27 0.00 27 81 0 22 0.00 22 82 0 21 0.00 21 83 0 18 0.00 18 84 1 21 4.55 22 85 0 22 0.00 22 86 0 21 0.00 21 87 0 24 0.00 24 88 0 18 0.00 18 89 1 19 5.00 20 90 0 20 0.00 20 91 0 17 0.00 17 92 1 25 3.85 26 93 0 18 0.00 18 94 0 18 0.00 18 95 0 17 0.00 17 96 0 15 0.00 15 97 0 17 0.00 17 98 0 18 0.00 18 99 0 13 0.00 13 100 0 18 0.00 18 101 0 19 0.00 19 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 10 16.67 12 2 3 8 27.27 11 3 1 24 4.00 25 4 2 16 11.11 18 5 0 27 0.00 27 6 0 7 0.00 7 7 0 9 0.00 9 8 0 9 0.00 9 9 1 10 9.09 11 10 0 21 0.00 21 11 0 9 0.00 9 12 0 12 0.00 12 13 0 6 0.00 6 14 0 7 0.00 7 15 0 9 0.00 9 16 0 10 0.00 10 17 0 4 0.00 4 18 0 15 0.00 15 19 0 9 0.00 9 20 0 12 0.00 12 21 0 13 0.00 13 22 0 6 0.00 6 23 0 6 0.00 6 24 0 8 0.00 8 25 0 14 0.00 14 26 0 7 0.00 7 27 0 7 0.00 7 28 0 8 0.00 8 29 0 5 0.00 5 30 0 6 0.00 6 31 0 7 0.00 7 32 0 16 0.00 16 33 0 4 0.00 4 34 0 13 0.00 13 35 0 6 0.00 6 36 0 9 0.00 9 37 0 6 0.00 6 38 0 8 0.00 8 39 0 5 0.00 5 40 0 3 0.00 3 41 0 9 0.00 9 42 0 6 0.00 6 43 0 6 0.00 6 44 0 3 0.00 3 45 0 2 0.00 2 46 0 2 0.00 2 47 0 7 0.00 7 48 0 10 0.00 10 49 0 4 0.00 4 50 1 11 8.33 12 51 0 5 0.00 5 52 0 8 0.00 8 53 0 1 0.00 1 54 0 8 0.00 8 55 0 3 0.00 3 56 0 3 0.00 3 57 0 5 0.00 5 58 0 5 0.00 5 59 0 5 0.00 5 60 0 2 0.00 2 61 0 3 0.00 3 62 0 2 0.00 2 63 0 6 0.00 6 64 0 1 0.00 1 65 0 7 0.00 7 66 1 5 16.67 6 67 0 3 0.00 3 68 0 6 0.00 6 69 0 5 0.00 5 70 0 5 0.00 5 71 0 3 0.00 3 72 0 5 0.00 5 73 0 0 0 74 0 7 0.00 7 75 0 4 0.00 4 76 0 1 0.00 1 77 0 2 0.00 2 78 0 4 0.00 4 79 0 3 0.00 3 80 0 5 0.00 5 81 0 6 0.00 6 82 0 3 0.00 3 83 0 5 0.00 5 84 0 2 0.00 2 85 0 2 0.00 2 86 0 2 0.00 2 87 0 5 0.00 5 88 0 1 0.00 1 89 0 2 0.00 2 90 0 1 0.00 1 91 0 2 0.00 2 92 0 5 0.00 5 93 1 2 33.33 3 94 1 4 20.00 5 95 0 1 0.00 1 96 0 2 0.00 2 97 0 2 0.00 2 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 12 0.00 12 2 2 8 20.00 10 3 2 17 10.53 19 4 1 10 9.09 11 5 0 14 0.00 14 6 0 26 0.00 26 7 0 6 0.00 6 8 0 10 0.00 10 9 0 10 0.00 10 10 1 13 7.14 14 11 0 7 0.00 7 12 1 9 10.00 10 13 0 6 0.00 6 14 0 8 0.00 8 15 0 17 0.00 17 16 0 10 0.00 10 17 0 8 0.00 8 18 0 13 0.00 13 19 0 5 0.00 5 20 0 4 0.00 4 21 0 6 0.00 6 22 0 7 0.00 7 23 0 14 0.00 14 24 0 6 0.00 6 25 0 7 0.00 7 26 0 9 0.00 9 27 0 10 0.00 10 28 0 6 0.00 6 29 0 9 0.00 9 30 0 6 0.00 6 31 0 7 0.00 7 32 0 4 0.00 4 33 0 11 0.00 11 34 0 5 0.00 5 35 0 6 0.00 6 36 0 6 0.00 6 37 0 8 0.00 8 38 0 9 0.00 9 39 0 7 0.00 7 40 0 5 0.00 5 41 1 5 16.67 6 42 0 6 0.00 6 43 0 5 0.00 5 44 0 9 0.00 9 45 0 7 0.00 7 46 1 6 14.29 7 47 0 5 0.00 5 48 0 11 0.00 11 49 0 6 0.00 6 50 0 2 0.00 2 51 1 6 14.29 7 52 0 4 0.00 4 53 0 8 0.00 8 54 0 8 0.00 8 55 0 6 0.00 6 56 0 7 0.00 7 57 0 5 0.00 5 58 0 8 0.00 8 59 0 7 0.00 7 60 0 6 0.00 6 61 0 5 0.00 5 62 0 2 0.00 2 63 0 6 0.00 6 64 0 9 0.00 9 65 0 5 0.00 5 66 0 5 0.00 5 67 0 3 0.00 3 68 1 5 16.67 6 69 0 5 0.00 5 70 0 6 0.00 6 71 0 4 0.00 4 72 0 7 0.00 7 73 0 3 0.00 3 74 1 5 16.67 6 75 1 6 14.29 7 76 0 4 0.00 4 77 0 3 0.00 3 78 0 7 0.00 7 79 0 1 0.00 1 80 0 4 0.00 4 81 0 3 0.00 3 82 0 1 0.00 1 83 0 2 0.00 2 84 0 5 0.00 5 85 0 5 0.00 5 86 0 5 0.00 5 87 0 1 0.00 1 88 0 3 0.00 3 89 1 5 16.67 6 90 0 4 0.00 4 91 0 1 0.00 1 92 0 2 0.00 2 93 0 4 0.00 4 94 0 3 0.00 3 95 0 1 0.00 1 96 0 3 0.00 3 97 0 4 0.00 4 98 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 1 5 16.67 6 3 1 10 9.09 11 4 2 4 33.33 6 5 0 3 0.00 3 6 0 10 0.00 10 7 0 14 0.00 14 8 0 21 0.00 21 9 0 19 0.00 19 10 0 23 0.00 23 11 0 23 0.00 23 12 0 17 0.00 17 13 0 16 0.00 16 14 0 18 0.00 18 15 0 12 0.00 12 16 0 13 0.00 13 17 0 23 0.00 23 18 0 17 0.00 17 19 0 10 0.00 10 20 0 9 0.00 9 21 1 7 12.50 8 22 0 10 0.00 10 23 0 9 0.00 9 24 0 12 0.00 12 25 0 8 0.00 8 26 0 15 0.00 15 27 0 12 0.00 12 28 0 14 0.00 14 29 0 12 0.00 12 30 0 9 0.00 9 31 0 8 0.00 8 32 1 11 8.33 12 33 0 11 0.00 11 34 0 15 0.00 15 35 0 7 0.00 7 36 0 20 0.00 20 37 0 12 0.00 12 38 0 15 0.00 15 39 0 15 0.00 15 40 0 8 0.00 8 41 0 6 0.00 6 42 0 5 0.00 5 43 0 16 0.00 16 44 0 10 0.00 10 45 0 13 0.00 13 46 0 12 0.00 12 47 0 9 0.00 9 48 0 8 0.00 8 49 0 11 0.00 11 50 1 6 14.29 7 51 1 8 11.11 9 52 0 9 0.00 9 53 0 12 0.00 12 54 0 12 0.00 12 55 1 12 7.69 13 56 0 6 0.00 6 57 0 11 0.00 11 58 0 6 0.00 6 59 0 9 0.00 9 60 0 10 0.00 10 61 0 9 0.00 9 62 0 7 0.00 7 63 0 7 0.00 7 64 0 11 0.00 11 65 0 2 0.00 2 66 0 10 0.00 10 67 0 7 0.00 7 68 0 6 0.00 6 69 0 6 0.00 6 70 0 8 0.00 8 71 0 4 0.00 4 72 0 7 0.00 7 73 0 14 0.00 14 74 0 9 0.00 9 75 1 6 14.29 7 76 0 8 0.00 8 77 0 8 0.00 8 78 0 8 0.00 8 79 0 8 0.00 8 80 0 5 0.00 5 81 0 3 0.00 3 82 0 12 0.00 12 83 0 4 0.00 4 84 0 7 0.00 7 85 0 9 0.00 9 86 0 4 0.00 4 87 0 10 0.00 10 88 0 7 0.00 7 89 0 6 0.00 6 90 0 8 0.00 8 91 0 3 0.00 3 92 0 8 0.00 8 93 0 6 0.00 6 94 0 7 0.00 7 95 0 6 0.00 6 96 0 9 0.00 9 97 0 4 0.00 4 98 0 8 0.00 8