/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-187_S20_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
406
Pairs without alignments under any condition
99594
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
16344
Methylated C's in CpG context
69
Methylated C's in CHG context
186
Methylated C's in CHH context
69
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
4667
Unmethylated C's in CHG context
4576
Unmethylated C's in CHH context
6777
Unmethylated C's in Unknown context
3
Percentage methylation (CpG context)
1.5%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
292
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
114
original bottom strand
Deduplication
Alignments analysed
406
Unique alignments
369
Duplicates removed
37
Duplicated alignments were found at 26 different positions