CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 51 0.00 51 2 0 63 0.00 63 3 0 55 0.00 55 4 1 32 3.03 33 5 0 36 0.00 36 6 0 21 0.00 21 7 0 26 0.00 26 8 0 24 0.00 24 9 1 31 3.12 32 10 0 31 0.00 31 11 0 24 0.00 24 12 0 23 0.00 23 13 0 21 0.00 21 14 0 28 0.00 28 15 0 39 0.00 39 16 0 24 0.00 24 17 0 27 0.00 27 18 0 31 0.00 31 19 0 26 0.00 26 20 0 47 0.00 47 21 0 37 0.00 37 22 0 25 0.00 25 23 0 35 0.00 35 24 1 25 3.85 26 25 0 29 0.00 29 26 1 32 3.03 33 27 0 24 0.00 24 28 0 25 0.00 25 29 0 25 0.00 25 30 0 35 0.00 35 31 0 28 0.00 28 32 0 26 0.00 26 33 1 30 3.23 31 34 1 25 3.85 26 35 0 33 0.00 33 36 1 36 2.70 37 37 2 20 9.09 22 38 0 27 0.00 27 39 1 29 3.33 30 40 1 23 4.17 24 41 1 30 3.23 31 42 0 28 0.00 28 43 0 15 0.00 15 44 0 18 0.00 18 45 0 26 0.00 26 46 1 24 4.00 25 47 1 26 3.70 27 48 0 25 0.00 25 49 0 38 0.00 38 50 0 26 0.00 26 51 1 33 2.94 34 52 0 29 0.00 29 53 0 31 0.00 31 54 2 23 8.00 25 55 1 28 3.45 29 56 1 28 3.45 29 57 0 18 0.00 18 58 0 31 0.00 31 59 2 37 5.13 39 60 0 22 0.00 22 61 0 24 0.00 24 62 0 24 0.00 24 63 1 16 5.88 17 64 0 12 0.00 12 65 0 18 0.00 18 66 3 17 15.00 20 67 0 29 0.00 29 68 0 16 0.00 16 69 1 23 4.17 24 70 0 24 0.00 24 71 1 24 4.00 25 72 0 27 0.00 27 73 0 12 0.00 12 74 0 23 0.00 23 75 0 24 0.00 24 76 1 23 4.17 24 77 0 19 0.00 19 78 1 24 4.00 25 79 0 18 0.00 18 80 2 19 9.52 21 81 3 21 12.50 24 82 1 20 4.76 21 83 0 28 0.00 28 84 0 16 0.00 16 85 0 26 0.00 26 86 0 18 0.00 18 87 1 15 6.25 16 88 0 19 0.00 19 89 0 19 0.00 19 90 0 14 0.00 14 91 0 23 0.00 23 92 0 11 0.00 11 93 0 20 0.00 20 94 0 16 0.00 16 95 0 15 0.00 15 96 0 19 0.00 19 97 1 18 5.26 19 98 0 19 0.00 19 99 0 19 0.00 19 100 0 22 0.00 22 101 1 21 4.55 22 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 30 19 61.22 49 2 13 14 48.15 27 3 9 13 40.91 22 4 2 24 7.69 26 5 2 17 10.53 19 6 0 18 0.00 18 7 1 32 3.03 33 8 1 28 3.45 29 9 1 27 3.57 28 10 1 20 4.76 21 11 0 35 0.00 35 12 1 30 3.23 31 13 1 37 2.63 38 14 0 29 0.00 29 15 0 20 0.00 20 16 1 33 2.94 34 17 0 35 0.00 35 18 0 19 0.00 19 19 1 25 3.85 26 20 0 28 0.00 28 21 0 27 0.00 27 22 1 32 3.03 33 23 0 31 0.00 31 24 2 25 7.41 27 25 1 36 2.70 37 26 1 23 4.17 24 27 2 41 4.65 43 28 0 35 0.00 35 29 2 29 6.45 31 30 0 26 0.00 26 31 1 24 4.00 25 32 0 31 0.00 31 33 0 36 0.00 36 34 1 30 3.23 31 35 0 30 0.00 30 36 0 27 0.00 27 37 0 29 0.00 29 38 0 23 0.00 23 39 0 20 0.00 20 40 0 25 0.00 25 41 0 39 0.00 39 42 0 27 0.00 27 43 1 20 4.76 21 44 2 29 6.45 31 45 2 20 9.09 22 46 1 22 4.35 23 47 0 27 0.00 27 48 0 20 0.00 20 49 1 19 5.00 20 50 0 23 0.00 23 51 0 11 0.00 11 52 0 33 0.00 33 53 0 25 0.00 25 54 1 23 4.17 24 55 0 23 0.00 23 56 1 19 5.00 20 57 1 25 3.85 26 58 0 35 0.00 35 59 0 22 0.00 22 60 2 26 7.14 28 61 0 24 0.00 24 62 0 24 0.00 24 63 1 26 3.70 27 64 0 30 0.00 30 65 0 20 0.00 20 66 1 36 2.70 37 67 0 28 0.00 28 68 0 14 0.00 14 69 0 19 0.00 19 70 1 24 4.00 25 71 0 19 0.00 19 72 0 19 0.00 19 73 0 21 0.00 21 74 0 22 0.00 22 75 1 18 5.26 19 76 2 16 11.11 18 77 0 15 0.00 15 78 0 20 0.00 20 79 0 28 0.00 28 80 0 19 0.00 19 81 0 19 0.00 19 82 0 19 0.00 19 83 0 20 0.00 20 84 0 18 0.00 18 85 0 14 0.00 14 86 0 12 0.00 12 87 0 17 0.00 17 88 0 16 0.00 16 89 0 10 0.00 10 90 0 20 0.00 20 91 3 15 16.67 18 92 3 17 15.00 20 93 1 15 6.25 16 94 0 20 0.00 20 95 0 22 0.00 22 96 0 17 0.00 17 97 0 13 0.00 13 98 0 12 0.00 12 99 0 11 0.00 11 100 0 15 0.00 15 101 2 9 18.18 11 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2 8 20.00 10 2 6 8 42.86 14 3 0 22 0.00 22 4 0 28 0.00 28 5 1 34 2.86 35 6 0 31 0.00 31 7 1 54 1.82 55 8 1 45 2.17 46 9 0 35 0.00 35 10 1 38 2.56 39 11 0 50 0.00 50 12 0 53 0.00 53 13 0 38 0.00 38 14 0 45 0.00 45 15 0 39 0.00 39 16 0 61 0.00 61 17 0 53 0.00 53 18 0 51 0.00 51 19 0 41 0.00 41 20 0 44 0.00 44 21 1 43 2.27 44 22 0 46 0.00 46 23 0 44 0.00 44 24 0 54 0.00 54 25 1 57 1.72 58 26 1 56 1.75 57 27 0 42 0.00 42 28 1 46 2.13 47 29 0 41 0.00 41 30 0 43 0.00 43 31 0 52 0.00 52 32 0 50 0.00 50 33 0 49 0.00 49 34 2 44 4.35 46 35 1 39 2.50 40 36 0 47 0.00 47 37 0 47 0.00 47 38 0 41 0.00 41 39 0 53 0.00 53 40 2 41 4.65 43 41 0 45 0.00 45 42 1 35 2.78 36 43 1 50 1.96 51 44 0 52 0.00 52 45 1 60 1.64 61 46 0 61 0.00 61 47 0 43 0.00 43 48 0 44 0.00 44 49 1 48 2.04 49 50 0 48 0.00 48 51 0 49 0.00 49 52 1 50 1.96 51 53 0 45 0.00 45 54 0 52 0.00 52 55 2 39 4.88 41 56 0 46 0.00 46 57 0 47 0.00 47 58 0 37 0.00 37 59 0 39 0.00 39 60 1 52 1.89 53 61 0 43 0.00 43 62 2 47 4.08 49 63 0 42 0.00 42 64 0 46 0.00 46 65 2 41 4.65 43 66 0 41 0.00 41 67 0 25 0.00 25 68 0 37 0.00 37 69 0 33 0.00 33 70 1 35 2.78 36 71 1 31 3.12 32 72 0 32 0.00 32 73 0 32 0.00 32 74 0 29 0.00 29 75 0 37 0.00 37 76 0 25 0.00 25 77 0 41 0.00 41 78 0 48 0.00 48 79 0 37 0.00 37 80 0 21 0.00 21 81 0 37 0.00 37 82 1 21 4.55 22 83 0 37 0.00 37 84 0 23 0.00 23 85 0 27 0.00 27 86 0 25 0.00 25 87 0 24 0.00 24 88 0 30 0.00 30 89 0 21 0.00 21 90 0 27 0.00 27 91 0 28 0.00 28 92 0 27 0.00 27 93 1 25 3.85 26 94 1 17 5.56 18 95 0 21 0.00 21 96 0 21 0.00 21 97 0 30 0.00 30 98 0 25 0.00 25 99 0 13 0.00 13 100 0 19 0.00 19 101 0 22 0.00 22 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 15 21.05 19 2 4 15 21.05 19 3 3 25 10.71 28 4 1 14 6.67 15 5 1 27 3.57 28 6 0 10 0.00 10 7 0 14 0.00 14 8 0 16 0.00 16 9 0 14 0.00 14 10 0 16 0.00 16 11 0 10 0.00 10 12 0 9 0.00 9 13 0 15 0.00 15 14 0 9 0.00 9 15 0 8 0.00 8 16 0 13 0.00 13 17 0 20 0.00 20 18 0 16 0.00 16 19 0 13 0.00 13 20 0 10 0.00 10 21 0 12 0.00 12 22 0 10 0.00 10 23 0 13 0.00 13 24 0 7 0.00 7 25 0 9 0.00 9 26 0 11 0.00 11 27 0 3 0.00 3 28 0 4 0.00 4 29 0 4 0.00 4 30 0 7 0.00 7 31 0 10 0.00 10 32 0 10 0.00 10 33 0 9 0.00 9 34 0 9 0.00 9 35 1 8 11.11 9 36 0 2 0.00 2 37 0 9 0.00 9 38 0 9 0.00 9 39 0 6 0.00 6 40 0 6 0.00 6 41 0 4 0.00 4 42 0 5 0.00 5 43 0 5 0.00 5 44 0 5 0.00 5 45 0 5 0.00 5 46 0 4 0.00 4 47 0 4 0.00 4 48 0 7 0.00 7 49 1 6 14.29 7 50 0 4 0.00 4 51 0 9 0.00 9 52 0 6 0.00 6 53 0 5 0.00 5 54 0 3 0.00 3 55 0 5 0.00 5 56 0 3 0.00 3 57 0 5 0.00 5 58 0 4 0.00 4 59 0 4 0.00 4 60 0 1 0.00 1 61 0 3 0.00 3 62 0 4 0.00 4 63 0 1 0.00 1 64 0 3 0.00 3 65 0 4 0.00 4 66 0 4 0.00 4 67 0 2 0.00 2 68 0 4 0.00 4 69 0 6 0.00 6 70 0 3 0.00 3 71 0 3 0.00 3 72 0 1 0.00 1 73 0 0 0 74 0 2 0.00 2 75 0 7 0.00 7 76 0 2 0.00 2 77 0 1 0.00 1 78 0 1 0.00 1 79 0 4 0.00 4 80 0 5 0.00 5 81 0 2 0.00 2 82 0 4 0.00 4 83 0 5 0.00 5 84 0 2 0.00 2 85 0 3 0.00 3 86 0 1 0.00 1 87 0 3 0.00 3 88 0 1 0.00 1 89 0 7 0.00 7 90 0 3 0.00 3 91 0 4 0.00 4 92 0 1 0.00 1 93 0 0 0 94 0 3 0.00 3 95 0 2 0.00 2 96 0 3 0.00 3 97 0 1 0.00 1 98 0 1 0.00 1 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 7 0.00 7 2 2 8 20.00 10 3 2 12 14.29 14 4 2 10 16.67 12 5 0 18 0.00 18 6 0 28 0.00 28 7 0 11 0.00 11 8 0 7 0.00 7 9 0 9 0.00 9 10 0 16 0.00 16 11 0 13 0.00 13 12 0 16 0.00 16 13 0 15 0.00 15 14 0 12 0.00 12 15 0 11 0.00 11 16 1 6 14.29 7 17 0 11 0.00 11 18 0 15 0.00 15 19 1 14 6.67 15 20 0 8 0.00 8 21 0 8 0.00 8 22 0 11 0.00 11 23 0 12 0.00 12 24 0 13 0.00 13 25 0 4 0.00 4 26 1 9 10.00 10 27 1 10 9.09 11 28 0 10 0.00 10 29 1 9 10.00 10 30 0 5 0.00 5 31 1 7 12.50 8 32 0 8 0.00 8 33 0 6 0.00 6 34 0 13 0.00 13 35 0 8 0.00 8 36 0 7 0.00 7 37 0 4 0.00 4 38 0 7 0.00 7 39 0 10 0.00 10 40 0 7 0.00 7 41 0 7 0.00 7 42 0 8 0.00 8 43 1 3 25.00 4 44 0 8 0.00 8 45 1 3 25.00 4 46 0 3 0.00 3 47 0 7 0.00 7 48 0 9 0.00 9 49 0 7 0.00 7 50 0 4 0.00 4 51 0 6 0.00 6 52 0 3 0.00 3 53 0 8 0.00 8 54 0 3 0.00 3 55 1 2 33.33 3 56 0 7 0.00 7 57 0 10 0.00 10 58 0 4 0.00 4 59 0 6 0.00 6 60 0 5 0.00 5 61 0 1 0.00 1 62 0 7 0.00 7 63 1 4 20.00 5 64 0 5 0.00 5 65 0 5 0.00 5 66 0 4 0.00 4 67 1 3 25.00 4 68 1 4 20.00 5 69 0 3 0.00 3 70 1 5 16.67 6 71 0 7 0.00 7 72 0 4 0.00 4 73 0 1 0.00 1 74 0 2 0.00 2 75 0 2 0.00 2 76 0 3 0.00 3 77 0 5 0.00 5 78 0 4 0.00 4 79 0 2 0.00 2 80 1 4 20.00 5 81 0 3 0.00 3 82 0 4 0.00 4 83 0 4 0.00 4 84 0 2 0.00 2 85 0 2 0.00 2 86 0 3 0.00 3 87 0 2 0.00 2 88 0 2 0.00 2 89 0 3 0.00 3 90 0 2 0.00 2 91 0 5 0.00 5 92 0 2 0.00 2 93 0 2 0.00 2 94 0 3 0.00 3 95 0 2 0.00 2 96 0 1 0.00 1 97 0 2 0.00 2 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 6 25.00 8 2 0 11 0.00 11 3 0 9 0.00 9 4 0 5 0.00 5 5 0 16 0.00 16 6 0 14 0.00 14 7 0 30 0.00 30 8 0 27 0.00 27 9 0 27 0.00 27 10 0 22 0.00 22 11 0 23 0.00 23 12 0 17 0.00 17 13 0 18 0.00 18 14 0 22 0.00 22 15 1 26 3.70 27 16 0 27 0.00 27 17 0 27 0.00 27 18 0 16 0.00 16 19 0 14 0.00 14 20 0 14 0.00 14 21 0 10 0.00 10 22 0 17 0.00 17 23 0 25 0.00 25 24 0 8 0.00 8 25 1 16 5.88 17 26 0 20 0.00 20 27 0 15 0.00 15 28 0 25 0.00 25 29 0 24 0.00 24 30 0 12 0.00 12 31 1 11 8.33 12 32 0 11 0.00 11 33 0 16 0.00 16 34 0 8 0.00 8 35 0 18 0.00 18 36 0 22 0.00 22 37 0 12 0.00 12 38 0 15 0.00 15 39 0 14 0.00 14 40 1 16 5.88 17 41 0 14 0.00 14 42 0 16 0.00 16 43 0 13 0.00 13 44 0 17 0.00 17 45 0 10 0.00 10 46 0 5 0.00 5 47 0 11 0.00 11 48 0 9 0.00 9 49 0 11 0.00 11 50 0 11 0.00 11 51 0 11 0.00 11 52 0 11 0.00 11 53 0 20 0.00 20 54 0 9 0.00 9 55 0 10 0.00 10 56 0 10 0.00 10 57 0 13 0.00 13 58 0 8 0.00 8 59 0 11 0.00 11 60 0 16 0.00 16 61 0 7 0.00 7 62 0 9 0.00 9 63 0 9 0.00 9 64 0 12 0.00 12 65 0 9 0.00 9 66 0 9 0.00 9 67 0 8 0.00 8 68 0 9 0.00 9 69 0 9 0.00 9 70 0 9 0.00 9 71 0 9 0.00 9 72 0 8 0.00 8 73 0 8 0.00 8 74 0 15 0.00 15 75 0 6 0.00 6 76 0 5 0.00 5 77 0 10 0.00 10 78 0 6 0.00 6 79 0 12 0.00 12 80 0 5 0.00 5 81 0 4 0.00 4 82 0 9 0.00 9 83 0 14 0.00 14 84 0 4 0.00 4 85 0 4 0.00 4 86 0 4 0.00 4 87 0 7 0.00 7 88 0 3 0.00 3 89 0 1 0.00 1 90 0 3 0.00 3 91 0 3 0.00 3 92 0 5 0.00 5 93 0 5 0.00 5 94 0 7 0.00 7 95 0 4 0.00 4 96 0 5 0.00 5 97 0 6 0.00 6 98 0 8 0.00 8