/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-185_S19_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
499
Pairs without alignments under any condition
99501
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19174
Methylated C's in CpG context
89
Methylated C's in CHG context
196
Methylated C's in CHH context
77
Methylated C's in Unknown context
8
Unmethylated C's in CpG context
5395
Unmethylated C's in CHG context
5101
Unmethylated C's in CHH context
8316
Unmethylated C's in Unknown context
7
Percentage methylation (CpG context)
1.6%
Percentage methylation (CHG context)
3.7%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
331
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
168
original bottom strand
Deduplication
Alignments analysed
499
Unique alignments
464
Duplicates removed
35
Duplicated alignments were found at 28 different positions
