/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-184_S18_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
457
Pairs without alignments under any condition
99543
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
17774
Methylated C's in CpG context
57
Methylated C's in CHG context
191
Methylated C's in CHH context
84
Methylated C's in Unknown context
1
Unmethylated C's in CpG context
4960
Unmethylated C's in CHG context
4864
Unmethylated C's in CHH context
7618
Unmethylated C's in Unknown context
3
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
3.8%
Percentage methylation (CHH context)
1.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
295
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
162
original bottom strand
Deduplication
Alignments analysed
457
Unique alignments
430
Duplicates removed
27
Duplicated alignments were found at 20 different positions