CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 56 5.08 59 2 0 58 0.00 58 3 0 60 0.00 60 4 1 41 2.38 42 5 0 16 0.00 16 6 0 16 0.00 16 7 0 27 0.00 27 8 0 23 0.00 23 9 0 26 0.00 26 10 0 32 0.00 32 11 0 32 0.00 32 12 0 24 0.00 24 13 0 23 0.00 23 14 0 25 0.00 25 15 0 18 0.00 18 16 0 28 0.00 28 17 0 25 0.00 25 18 0 26 0.00 26 19 0 24 0.00 24 20 0 29 0.00 29 21 0 33 0.00 33 22 0 24 0.00 24 23 0 30 0.00 30 24 0 34 0.00 34 25 0 24 0.00 24 26 0 34 0.00 34 27 0 34 0.00 34 28 0 34 0.00 34 29 0 28 0.00 28 30 1 32 3.03 33 31 1 31 3.12 32 32 0 33 0.00 33 33 1 34 2.86 35 34 0 31 0.00 31 35 0 25 0.00 25 36 1 29 3.33 30 37 0 26 0.00 26 38 0 25 0.00 25 39 0 31 0.00 31 40 1 28 3.45 29 41 0 28 0.00 28 42 0 30 0.00 30 43 0 21 0.00 21 44 0 19 0.00 19 45 0 26 0.00 26 46 0 22 0.00 22 47 0 22 0.00 22 48 2 18 10.00 20 49 0 31 0.00 31 50 0 33 0.00 33 51 0 29 0.00 29 52 0 29 0.00 29 53 1 29 3.33 30 54 0 31 0.00 31 55 0 27 0.00 27 56 0 30 0.00 30 57 0 25 0.00 25 58 0 34 0.00 34 59 0 46 0.00 46 60 1 29 3.33 30 61 0 26 0.00 26 62 1 30 3.23 31 63 0 30 0.00 30 64 1 20 4.76 21 65 1 20 4.76 21 66 2 20 9.09 22 67 0 32 0.00 32 68 0 25 0.00 25 69 0 30 0.00 30 70 0 15 0.00 15 71 1 24 4.00 25 72 0 20 0.00 20 73 0 21 0.00 21 74 0 21 0.00 21 75 0 23 0.00 23 76 1 26 3.70 27 77 0 16 0.00 16 78 0 22 0.00 22 79 0 18 0.00 18 80 0 25 0.00 25 81 1 27 3.57 28 82 0 26 0.00 26 83 0 21 0.00 21 84 0 24 0.00 24 85 0 20 0.00 20 86 0 19 0.00 19 87 1 25 3.85 26 88 1 26 3.70 27 89 0 15 0.00 15 90 0 21 0.00 21 91 0 22 0.00 22 92 0 9 0.00 9 93 0 21 0.00 21 94 0 14 0.00 14 95 0 19 0.00 19 96 0 14 0.00 14 97 0 18 0.00 18 98 0 20 0.00 20 99 0 15 0.00 15 100 0 21 0.00 21 101 0 16 0.00 16 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 24 22 52.17 46 2 11 16 40.74 27 3 9 17 34.62 26 4 1 22 4.35 23 5 1 17 5.56 18 6 3 29 9.38 32 7 5 34 12.82 39 8 0 28 0.00 28 9 1 21 4.55 22 10 0 25 0.00 25 11 2 31 6.06 33 12 1 28 3.45 29 13 0 22 0.00 22 14 0 19 0.00 19 15 1 28 3.45 29 16 0 29 0.00 29 17 0 33 0.00 33 18 1 20 4.76 21 19 0 23 0.00 23 20 0 35 0.00 35 21 0 19 0.00 19 22 1 26 3.70 27 23 0 29 0.00 29 24 1 30 3.23 31 25 0 35 0.00 35 26 0 31 0.00 31 27 2 28 6.67 30 28 0 29 0.00 29 29 0 30 0.00 30 30 1 21 4.55 22 31 2 32 5.88 34 32 1 28 3.45 29 33 1 28 3.45 29 34 0 30 0.00 30 35 0 28 0.00 28 36 0 39 0.00 39 37 0 28 0.00 28 38 0 25 0.00 25 39 0 35 0.00 35 40 0 37 0.00 37 41 0 29 0.00 29 42 2 27 6.90 29 43 0 26 0.00 26 44 0 29 0.00 29 45 1 17 5.56 18 46 0 21 0.00 21 47 0 29 0.00 29 48 0 29 0.00 29 49 0 26 0.00 26 50 0 18 0.00 18 51 0 27 0.00 27 52 1 40 2.44 41 53 0 35 0.00 35 54 2 40 4.76 42 55 0 38 0.00 38 56 1 27 3.57 28 57 0 29 0.00 29 58 2 20 9.09 22 59 0 26 0.00 26 60 0 28 0.00 28 61 1 27 3.57 28 62 0 18 0.00 18 63 0 29 0.00 29 64 1 22 4.35 23 65 0 30 0.00 30 66 0 19 0.00 19 67 0 26 0.00 26 68 1 20 4.76 21 69 0 23 0.00 23 70 0 29 0.00 29 71 0 25 0.00 25 72 0 20 0.00 20 73 0 28 0.00 28 74 0 16 0.00 16 75 1 28 3.45 29 76 0 18 0.00 18 77 0 13 0.00 13 78 0 24 0.00 24 79 0 31 0.00 31 80 1 24 4.00 25 81 1 14 6.67 15 82 0 26 0.00 26 83 1 25 3.85 26 84 0 22 0.00 22 85 0 11 0.00 11 86 0 21 0.00 21 87 0 18 0.00 18 88 0 24 0.00 24 89 0 22 0.00 22 90 0 19 0.00 19 91 0 16 0.00 16 92 1 14 6.67 15 93 0 13 0.00 13 94 1 18 5.26 19 95 0 14 0.00 14 96 0 16 0.00 16 97 0 22 0.00 22 98 0 13 0.00 13 99 1 9 10.00 10 100 1 10 9.09 11 101 0 13 0.00 13 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 9 43.75 16 2 1 8 11.11 9 3 0 24 0.00 24 4 2 26 7.14 28 5 1 39 2.50 40 6 1 31 3.12 32 7 1 46 2.13 47 8 1 47 2.08 48 9 1 32 3.03 33 10 0 35 0.00 35 11 0 31 0.00 31 12 0 44 0.00 44 13 0 36 0.00 36 14 0 48 0.00 48 15 0 62 0.00 62 16 0 60 0.00 60 17 0 39 0.00 39 18 0 44 0.00 44 19 0 53 0.00 53 20 0 41 0.00 41 21 0 33 0.00 33 22 0 47 0.00 47 23 0 47 0.00 47 24 0 50 0.00 50 25 0 53 0.00 53 26 0 48 0.00 48 27 0 53 0.00 53 28 1 48 2.04 49 29 1 48 2.04 49 30 1 44 2.22 45 31 0 59 0.00 59 32 1 45 2.17 46 33 1 51 1.92 52 34 0 43 0.00 43 35 0 42 0.00 42 36 1 46 2.13 47 37 0 41 0.00 41 38 0 41 0.00 41 39 0 46 0.00 46 40 1 42 2.33 43 41 0 41 0.00 41 42 0 37 0.00 37 43 0 50 0.00 50 44 1 69 1.43 70 45 1 50 1.96 51 46 0 60 0.00 60 47 0 44 0.00 44 48 0 61 0.00 61 49 0 38 0.00 38 50 0 48 0.00 48 51 0 62 0.00 62 52 0 47 0.00 47 53 0 46 0.00 46 54 0 38 0.00 38 55 0 32 0.00 32 56 0 37 0.00 37 57 1 50 1.96 51 58 1 31 3.12 32 59 0 31 0.00 31 60 0 35 0.00 35 61 0 28 0.00 28 62 0 41 0.00 41 63 0 34 0.00 34 64 0 48 0.00 48 65 0 25 0.00 25 66 1 46 2.13 47 67 0 33 0.00 33 68 0 41 0.00 41 69 0 39 0.00 39 70 1 43 2.27 44 71 0 36 0.00 36 72 0 39 0.00 39 73 0 32 0.00 32 74 0 43 0.00 43 75 0 27 0.00 27 76 0 37 0.00 37 77 0 40 0.00 40 78 0 57 0.00 57 79 0 40 0.00 40 80 1 30 3.23 31 81 0 22 0.00 22 82 2 27 6.90 29 83 0 30 0.00 30 84 0 31 0.00 31 85 0 37 0.00 37 86 0 27 0.00 27 87 1 32 3.03 33 88 0 34 0.00 34 89 0 25 0.00 25 90 1 21 4.55 22 91 0 22 0.00 22 92 0 27 0.00 27 93 0 32 0.00 32 94 0 29 0.00 29 95 0 30 0.00 30 96 0 23 0.00 23 97 0 33 0.00 33 98 1 27 3.57 28 99 0 13 0.00 13 100 0 25 0.00 25 101 1 28 3.45 29 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 10 9.09 11 2 2 18 10.00 20 3 4 26 13.33 30 4 4 16 20.00 20 5 0 26 0.00 26 6 0 15 0.00 15 7 0 12 0.00 12 8 0 15 0.00 15 9 0 20 0.00 20 10 0 17 0.00 17 11 0 18 0.00 18 12 0 15 0.00 15 13 0 10 0.00 10 14 0 7 0.00 7 15 0 13 0.00 13 16 0 15 0.00 15 17 0 16 0.00 16 18 1 22 4.35 23 19 0 9 0.00 9 20 0 14 0.00 14 21 0 16 0.00 16 22 0 6 0.00 6 23 0 9 0.00 9 24 0 9 0.00 9 25 0 15 0.00 15 26 0 12 0.00 12 27 0 11 0.00 11 28 0 14 0.00 14 29 0 8 0.00 8 30 0 10 0.00 10 31 0 14 0.00 14 32 0 18 0.00 18 33 0 7 0.00 7 34 0 14 0.00 14 35 0 9 0.00 9 36 0 5 0.00 5 37 0 9 0.00 9 38 1 7 12.50 8 39 0 4 0.00 4 40 0 11 0.00 11 41 0 5 0.00 5 42 0 9 0.00 9 43 0 12 0.00 12 44 0 11 0.00 11 45 0 8 0.00 8 46 0 8 0.00 8 47 0 7 0.00 7 48 0 5 0.00 5 49 0 8 0.00 8 50 0 11 0.00 11 51 0 11 0.00 11 52 0 5 0.00 5 53 0 2 0.00 2 54 0 10 0.00 10 55 0 5 0.00 5 56 0 7 0.00 7 57 0 4 0.00 4 58 0 6 0.00 6 59 0 4 0.00 4 60 0 7 0.00 7 61 0 5 0.00 5 62 0 3 0.00 3 63 0 4 0.00 4 64 0 6 0.00 6 65 0 10 0.00 10 66 0 4 0.00 4 67 0 5 0.00 5 68 0 4 0.00 4 69 0 8 0.00 8 70 0 4 0.00 4 71 0 3 0.00 3 72 0 4 0.00 4 73 0 0 0 74 0 4 0.00 4 75 0 2 0.00 2 76 0 7 0.00 7 77 0 2 0.00 2 78 0 1 0.00 1 79 0 3 0.00 3 80 0 4 0.00 4 81 0 3 0.00 3 82 0 3 0.00 3 83 0 3 0.00 3 84 0 5 0.00 5 85 0 2 0.00 2 86 0 6 0.00 6 87 0 6 0.00 6 88 0 3 0.00 3 89 0 6 0.00 6 90 0 1 0.00 1 91 0 7 0.00 7 92 0 3 0.00 3 93 0 6 0.00 6 94 0 1 0.00 1 95 0 3 0.00 3 96 0 4 0.00 4 97 0 4 0.00 4 98 0 0 0 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 13 7.14 14 2 2 9 18.18 11 3 4 22 15.38 26 4 5 16 23.81 21 5 0 18 0.00 18 6 0 27 0.00 27 7 1 10 9.09 11 8 1 12 7.69 13 9 0 17 0.00 17 10 0 15 0.00 15 11 0 14 0.00 14 12 0 25 0.00 25 13 0 11 0.00 11 14 0 14 0.00 14 15 0 15 0.00 15 16 0 8 0.00 8 17 0 14 0.00 14 18 0 11 0.00 11 19 0 13 0.00 13 20 0 13 0.00 13 21 0 11 0.00 11 22 0 12 0.00 12 23 0 6 0.00 6 24 0 11 0.00 11 25 0 8 0.00 8 26 0 9 0.00 9 27 0 7 0.00 7 28 0 8 0.00 8 29 1 8 11.11 9 30 0 6 0.00 6 31 0 8 0.00 8 32 0 10 0.00 10 33 0 12 0.00 12 34 0 9 0.00 9 35 1 8 11.11 9 36 0 8 0.00 8 37 0 12 0.00 12 38 0 12 0.00 12 39 0 5 0.00 5 40 0 5 0.00 5 41 0 14 0.00 14 42 0 10 0.00 10 43 0 7 0.00 7 44 0 10 0.00 10 45 0 6 0.00 6 46 0 5 0.00 5 47 0 11 0.00 11 48 0 9 0.00 9 49 0 7 0.00 7 50 0 7 0.00 7 51 0 5 0.00 5 52 0 6 0.00 6 53 0 6 0.00 6 54 0 8 0.00 8 55 0 9 0.00 9 56 0 5 0.00 5 57 0 8 0.00 8 58 0 4 0.00 4 59 0 7 0.00 7 60 0 0 0 61 0 9 0.00 9 62 0 3 0.00 3 63 0 4 0.00 4 64 0 5 0.00 5 65 1 7 12.50 8 66 0 6 0.00 6 67 0 4 0.00 4 68 2 5 28.57 7 69 1 4 20.00 5 70 2 6 25.00 8 71 0 5 0.00 5 72 0 5 0.00 5 73 0 3 0.00 3 74 0 5 0.00 5 75 0 3 0.00 3 76 1 2 33.33 3 77 1 2 33.33 3 78 0 7 0.00 7 79 0 5 0.00 5 80 0 2 0.00 2 81 0 7 0.00 7 82 0 5 0.00 5 83 0 1 0.00 1 84 0 4 0.00 4 85 0 9 0.00 9 86 0 3 0.00 3 87 0 7 0.00 7 88 0 7 0.00 7 89 0 4 0.00 4 90 0 0 0 91 0 3 0.00 3 92 0 4 0.00 4 93 0 1 0.00 1 94 0 3 0.00 3 95 1 3 25.00 4 96 0 3 0.00 3 97 0 5 0.00 5 98 0 4 0.00 4 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 9 18.18 11 2 0 9 0.00 9 3 1 10 9.09 11 4 1 7 12.50 8 5 0 13 0.00 13 6 0 22 0.00 22 7 1 18 5.26 19 8 0 35 0.00 35 9 0 30 0.00 30 10 0 29 0.00 29 11 0 27 0.00 27 12 0 28 0.00 28 13 0 29 0.00 29 14 1 28 3.45 29 15 0 36 0.00 36 16 0 29 0.00 29 17 0 19 0.00 19 18 1 25 3.85 26 19 0 20 0.00 20 20 0 18 0.00 18 21 0 13 0.00 13 22 0 14 0.00 14 23 1 27 3.57 28 24 0 20 0.00 20 25 0 25 0.00 25 26 0 22 0.00 22 27 0 20 0.00 20 28 0 28 0.00 28 29 0 24 0.00 24 30 0 15 0.00 15 31 1 7 12.50 8 32 0 16 0.00 16 33 0 20 0.00 20 34 0 18 0.00 18 35 0 12 0.00 12 36 0 19 0.00 19 37 0 20 0.00 20 38 0 22 0.00 22 39 0 23 0.00 23 40 0 12 0.00 12 41 0 8 0.00 8 42 0 12 0.00 12 43 0 16 0.00 16 44 0 20 0.00 20 45 0 22 0.00 22 46 0 12 0.00 12 47 0 6 0.00 6 48 0 10 0.00 10 49 0 14 0.00 14 50 0 9 0.00 9 51 0 11 0.00 11 52 1 16 5.88 17 53 0 13 0.00 13 54 0 14 0.00 14 55 0 11 0.00 11 56 1 10 9.09 11 57 0 14 0.00 14 58 0 13 0.00 13 59 0 11 0.00 11 60 1 12 7.69 13 61 0 14 0.00 14 62 0 13 0.00 13 63 0 9 0.00 9 64 0 11 0.00 11 65 0 8 0.00 8 66 0 12 0.00 12 67 0 13 0.00 13 68 0 12 0.00 12 69 0 9 0.00 9 70 0 6 0.00 6 71 0 10 0.00 10 72 0 13 0.00 13 73 0 15 0.00 15 74 0 12 0.00 12 75 0 11 0.00 11 76 0 9 0.00 9 77 1 12 7.69 13 78 0 7 0.00 7 79 0 12 0.00 12 80 1 5 16.67 6 81 0 12 0.00 12 82 0 9 0.00 9 83 0 2 0.00 2 84 0 12 0.00 12 85 0 8 0.00 8 86 0 12 0.00 12 87 0 7 0.00 7 88 0 6 0.00 6 89 1 6 14.29 7 90 0 8 0.00 8 91 0 6 0.00 6 92 0 9 0.00 9 93 0 9 0.00 9 94 0 9 0.00 9 95 0 7 0.00 7 96 0 6 0.00 6 97 0 4 0.00 4 98 0 9 0.00 9