/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-182_S17_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-182_S17_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
466
Pairs without alignments under any condition
99534
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19438
Methylated C's in CpG context
57
Methylated C's in CHG context
189
Methylated C's in CHH context
75
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
5560
Unmethylated C's in CHG context
5249
Unmethylated C's in CHH context
8308
Unmethylated C's in Unknown context
2
Percentage methylation (CpG context)
1.0%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
304
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
162
original bottom strand
Deduplication
Alignments analysed
466
Unique alignments
439
Duplicates removed
27
Duplicated alignments were found at 23 different positions
