CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 40 6.98 43 2 0 56 0.00 56 3 0 48 0.00 48 4 0 32 0.00 32 5 0 31 0.00 31 6 0 15 0.00 15 7 0 20 0.00 20 8 0 19 0.00 19 9 1 25 3.85 26 10 0 27 0.00 27 11 0 28 0.00 28 12 0 24 0.00 24 13 0 16 0.00 16 14 0 30 0.00 30 15 1 21 4.55 22 16 0 20 0.00 20 17 2 30 6.25 32 18 0 25 0.00 25 19 0 20 0.00 20 20 0 24 0.00 24 21 0 31 0.00 31 22 0 23 0.00 23 23 0 31 0.00 31 24 0 26 0.00 26 25 0 24 0.00 24 26 1 23 4.17 24 27 1 23 4.17 24 28 0 25 0.00 25 29 0 25 0.00 25 30 0 34 0.00 34 31 0 26 0.00 26 32 1 28 3.45 29 33 0 26 0.00 26 34 0 22 0.00 22 35 0 29 0.00 29 36 0 28 0.00 28 37 0 22 0.00 22 38 0 27 0.00 27 39 0 22 0.00 22 40 0 21 0.00 21 41 0 28 0.00 28 42 0 22 0.00 22 43 0 23 0.00 23 44 0 19 0.00 19 45 0 27 0.00 27 46 1 16 5.88 17 47 0 28 0.00 28 48 0 27 0.00 27 49 0 18 0.00 18 50 1 32 3.03 33 51 0 33 0.00 33 52 1 35 2.78 36 53 1 19 5.00 20 54 0 27 0.00 27 55 0 29 0.00 29 56 0 17 0.00 17 57 0 31 0.00 31 58 0 32 0.00 32 59 0 35 0.00 35 60 0 26 0.00 26 61 0 20 0.00 20 62 1 25 3.85 26 63 0 22 0.00 22 64 1 20 4.76 21 65 0 23 0.00 23 66 0 19 0.00 19 67 0 23 0.00 23 68 0 16 0.00 16 69 0 25 0.00 25 70 1 14 6.67 15 71 0 18 0.00 18 72 0 10 0.00 10 73 0 19 0.00 19 74 0 28 0.00 28 75 0 22 0.00 22 76 0 27 0.00 27 77 0 25 0.00 25 78 1 26 3.70 27 79 0 19 0.00 19 80 0 22 0.00 22 81 1 25 3.85 26 82 1 24 4.00 25 83 0 18 0.00 18 84 0 25 0.00 25 85 0 18 0.00 18 86 0 22 0.00 22 87 0 20 0.00 20 88 0 17 0.00 17 89 0 13 0.00 13 90 1 14 6.67 15 91 0 19 0.00 19 92 2 15 11.76 17 93 0 20 0.00 20 94 0 18 0.00 18 95 0 8 0.00 8 96 0 12 0.00 12 97 1 17 5.56 18 98 0 15 0.00 15 99 0 19 0.00 19 100 0 13 0.00 13 101 0 14 0.00 14 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 31 16 65.96 47 2 13 9 59.09 22 3 10 16 38.46 26 4 3 20 13.04 23 5 0 23 0.00 23 6 0 21 0.00 21 7 1 34 2.86 35 8 1 28 3.45 29 9 0 22 0.00 22 10 1 24 4.00 25 11 1 16 5.88 17 12 0 24 0.00 24 13 0 32 0.00 32 14 0 27 0.00 27 15 0 21 0.00 21 16 0 18 0.00 18 17 0 20 0.00 20 18 0 21 0.00 21 19 0 32 0.00 32 20 0 26 0.00 26 21 1 23 4.17 24 22 1 35 2.78 36 23 0 22 0.00 22 24 0 26 0.00 26 25 0 24 0.00 24 26 0 36 0.00 36 27 1 30 3.23 31 28 1 23 4.17 24 29 0 24 0.00 24 30 1 23 4.17 24 31 2 29 6.45 31 32 0 26 0.00 26 33 0 30 0.00 30 34 0 19 0.00 19 35 1 29 3.33 30 36 0 28 0.00 28 37 0 23 0.00 23 38 0 15 0.00 15 39 1 18 5.26 19 40 0 18 0.00 18 41 1 26 3.70 27 42 0 33 0.00 33 43 0 35 0.00 35 44 0 26 0.00 26 45 2 18 10.00 20 46 0 24 0.00 24 47 0 29 0.00 29 48 0 26 0.00 26 49 0 35 0.00 35 50 0 28 0.00 28 51 1 18 5.26 19 52 0 16 0.00 16 53 0 26 0.00 26 54 0 40 0.00 40 55 0 18 0.00 18 56 1 21 4.55 22 57 0 20 0.00 20 58 1 14 6.67 15 59 0 27 0.00 27 60 0 26 0.00 26 61 0 28 0.00 28 62 0 23 0.00 23 63 0 19 0.00 19 64 0 30 0.00 30 65 0 27 0.00 27 66 0 22 0.00 22 67 1 19 5.00 20 68 0 18 0.00 18 69 0 31 0.00 31 70 1 30 3.23 31 71 0 20 0.00 20 72 0 26 0.00 26 73 1 28 3.45 29 74 0 21 0.00 21 75 0 22 0.00 22 76 0 17 0.00 17 77 1 25 3.85 26 78 0 20 0.00 20 79 0 20 0.00 20 80 0 21 0.00 21 81 0 24 0.00 24 82 0 22 0.00 22 83 0 16 0.00 16 84 0 19 0.00 19 85 0 13 0.00 13 86 0 22 0.00 22 87 0 20 0.00 20 88 0 11 0.00 11 89 1 15 6.25 16 90 1 30 3.23 31 91 0 11 0.00 11 92 0 19 0.00 19 93 1 14 6.67 15 94 0 14 0.00 14 95 0 18 0.00 18 96 0 20 0.00 20 97 0 21 0.00 21 98 1 18 5.26 19 99 0 7 0.00 7 100 1 11 8.33 12 101 0 7 0.00 7 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 7 15 31.82 22 2 5 15 25.00 20 3 1 30 3.23 31 4 0 19 0.00 19 5 1 34 2.86 35 6 2 34 5.56 36 7 0 47 0.00 47 8 0 32 0.00 32 9 3 33 8.33 36 10 0 29 0.00 29 11 0 34 0.00 34 12 0 36 0.00 36 13 0 30 0.00 30 14 0 33 0.00 33 15 0 34 0.00 34 16 0 48 0.00 48 17 1 38 2.56 39 18 1 40 2.44 41 19 0 44 0.00 44 20 2 39 4.88 41 21 1 35 2.78 36 22 0 37 0.00 37 23 0 34 0.00 34 24 1 51 1.92 52 25 0 53 0.00 53 26 1 50 1.96 51 27 0 44 0.00 44 28 1 49 2.00 50 29 1 50 1.96 51 30 0 45 0.00 45 31 0 58 0.00 58 32 0 60 0.00 60 33 0 43 0.00 43 34 0 46 0.00 46 35 1 31 3.12 32 36 0 32 0.00 32 37 0 38 0.00 38 38 0 54 0.00 54 39 1 38 2.56 39 40 0 43 0.00 43 41 0 41 0.00 41 42 0 36 0.00 36 43 0 40 0.00 40 44 0 45 0.00 45 45 0 50 0.00 50 46 0 42 0.00 42 47 0 46 0.00 46 48 0 44 0.00 44 49 0 37 0.00 37 50 0 39 0.00 39 51 1 41 2.38 42 52 0 43 0.00 43 53 0 53 0.00 53 54 0 46 0.00 46 55 0 41 0.00 41 56 0 41 0.00 41 57 1 50 1.96 51 58 0 43 0.00 43 59 1 44 2.22 45 60 1 40 2.44 41 61 0 31 0.00 31 62 1 30 3.23 31 63 0 42 0.00 42 64 0 44 0.00 44 65 0 32 0.00 32 66 0 30 0.00 30 67 0 35 0.00 35 68 0 33 0.00 33 69 0 34 0.00 34 70 0 32 0.00 32 71 0 34 0.00 34 72 0 33 0.00 33 73 0 28 0.00 28 74 0 36 0.00 36 75 2 30 6.25 32 76 0 36 0.00 36 77 1 40 2.44 41 78 0 40 0.00 40 79 0 33 0.00 33 80 0 35 0.00 35 81 1 35 2.78 36 82 0 24 0.00 24 83 0 29 0.00 29 84 0 25 0.00 25 85 1 35 2.78 36 86 0 22 0.00 22 87 0 34 0.00 34 88 0 27 0.00 27 89 0 31 0.00 31 90 1 33 2.94 34 91 0 21 0.00 21 92 0 27 0.00 27 93 0 23 0.00 23 94 0 24 0.00 24 95 0 28 0.00 28 96 0 19 0.00 19 97 0 27 0.00 27 98 0 24 0.00 24 99 0 21 0.00 21 100 0 16 0.00 16 101 0 38 0.00 38 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 15 11.76 17 2 5 11 31.25 16 3 5 29 14.71 34 4 0 22 0.00 22 5 1 27 3.57 28 6 0 18 0.00 18 7 1 18 5.26 19 8 0 17 0.00 17 9 0 17 0.00 17 10 0 16 0.00 16 11 0 13 0.00 13 12 0 14 0.00 14 13 0 12 0.00 12 14 0 7 0.00 7 15 0 15 0.00 15 16 0 10 0.00 10 17 0 11 0.00 11 18 0 14 0.00 14 19 0 16 0.00 16 20 0 12 0.00 12 21 0 19 0.00 19 22 0 8 0.00 8 23 0 17 0.00 17 24 0 12 0.00 12 25 0 14 0.00 14 26 0 15 0.00 15 27 0 10 0.00 10 28 0 16 0.00 16 29 0 13 0.00 13 30 0 3 0.00 3 31 0 24 0.00 24 32 0 10 0.00 10 33 0 6 0.00 6 34 0 15 0.00 15 35 0 15 0.00 15 36 0 5 0.00 5 37 0 16 0.00 16 38 0 3 0.00 3 39 0 7 0.00 7 40 0 12 0.00 12 41 0 2 0.00 2 42 0 7 0.00 7 43 0 11 0.00 11 44 0 10 0.00 10 45 0 4 0.00 4 46 0 4 0.00 4 47 0 7 0.00 7 48 0 11 0.00 11 49 0 8 0.00 8 50 0 3 0.00 3 51 0 11 0.00 11 52 0 9 0.00 9 53 0 5 0.00 5 54 0 8 0.00 8 55 0 5 0.00 5 56 0 10 0.00 10 57 0 4 0.00 4 58 0 10 0.00 10 59 0 9 0.00 9 60 0 3 0.00 3 61 0 5 0.00 5 62 0 5 0.00 5 63 0 5 0.00 5 64 0 4 0.00 4 65 0 3 0.00 3 66 0 5 0.00 5 67 0 5 0.00 5 68 0 5 0.00 5 69 0 8 0.00 8 70 0 5 0.00 5 71 0 4 0.00 4 72 0 5 0.00 5 73 0 2 0.00 2 74 0 2 0.00 2 75 0 4 0.00 4 76 0 7 0.00 7 77 0 2 0.00 2 78 0 3 0.00 3 79 0 5 0.00 5 80 0 10 0.00 10 81 0 3 0.00 3 82 0 4 0.00 4 83 0 2 0.00 2 84 0 3 0.00 3 85 0 2 0.00 2 86 0 3 0.00 3 87 0 3 0.00 3 88 0 2 0.00 2 89 0 5 0.00 5 90 0 1 0.00 1 91 0 4 0.00 4 92 0 6 0.00 6 93 0 2 0.00 2 94 0 2 0.00 2 95 0 3 0.00 3 96 0 2 0.00 2 97 0 4 0.00 4 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 7 22.22 9 2 0 15 0.00 15 3 2 13 13.33 15 4 1 21 4.55 22 5 0 15 0.00 15 6 0 25 0.00 25 7 1 17 5.56 18 8 0 19 0.00 19 9 0 16 0.00 16 10 0 18 0.00 18 11 0 17 0.00 17 12 0 12 0.00 12 13 0 14 0.00 14 14 0 17 0.00 17 15 0 27 0.00 27 16 0 5 0.00 5 17 0 14 0.00 14 18 1 8 11.11 9 19 0 15 0.00 15 20 0 15 0.00 15 21 0 10 0.00 10 22 0 19 0.00 19 23 0 12 0.00 12 24 0 13 0.00 13 25 0 10 0.00 10 26 0 14 0.00 14 27 0 11 0.00 11 28 0 14 0.00 14 29 0 14 0.00 14 30 0 7 0.00 7 31 0 9 0.00 9 32 0 15 0.00 15 33 2 8 20.00 10 34 0 7 0.00 7 35 1 9 10.00 10 36 0 12 0.00 12 37 0 14 0.00 14 38 0 12 0.00 12 39 0 9 0.00 9 40 0 8 0.00 8 41 0 13 0.00 13 42 0 8 0.00 8 43 0 4 0.00 4 44 0 18 0.00 18 45 0 5 0.00 5 46 0 9 0.00 9 47 1 10 9.09 11 48 0 11 0.00 11 49 0 7 0.00 7 50 0 6 0.00 6 51 0 10 0.00 10 52 0 11 0.00 11 53 0 6 0.00 6 54 0 12 0.00 12 55 0 9 0.00 9 56 0 7 0.00 7 57 1 8 11.11 9 58 0 7 0.00 7 59 0 11 0.00 11 60 0 10 0.00 10 61 0 10 0.00 10 62 1 4 20.00 5 63 0 7 0.00 7 64 0 4 0.00 4 65 0 6 0.00 6 66 0 3 0.00 3 67 0 6 0.00 6 68 0 9 0.00 9 69 0 6 0.00 6 70 0 11 0.00 11 71 2 6 25.00 8 72 0 7 0.00 7 73 0 5 0.00 5 74 0 9 0.00 9 75 0 5 0.00 5 76 0 6 0.00 6 77 0 4 0.00 4 78 0 6 0.00 6 79 0 2 0.00 2 80 0 5 0.00 5 81 0 3 0.00 3 82 0 6 0.00 6 83 0 5 0.00 5 84 0 4 0.00 4 85 0 9 0.00 9 86 0 2 0.00 2 87 0 7 0.00 7 88 0 5 0.00 5 89 0 4 0.00 4 90 0 2 0.00 2 91 0 2 0.00 2 92 0 5 0.00 5 93 0 4 0.00 4 94 0 3 0.00 3 95 0 1 0.00 1 96 0 4 0.00 4 97 0 3 0.00 3 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 9 10.00 10 2 1 5 16.67 6 3 1 9 10.00 10 4 0 11 0.00 11 5 0 16 0.00 16 6 0 14 0.00 14 7 0 23 0.00 23 8 0 22 0.00 22 9 0 28 0.00 28 10 0 38 0.00 38 11 1 25 3.85 26 12 0 32 0.00 32 13 0 24 0.00 24 14 0 20 0.00 20 15 0 32 0.00 32 16 0 29 0.00 29 17 1 22 4.35 23 18 0 29 0.00 29 19 0 19 0.00 19 20 0 17 0.00 17 21 0 22 0.00 22 22 0 18 0.00 18 23 0 27 0.00 27 24 0 18 0.00 18 25 0 21 0.00 21 26 0 17 0.00 17 27 0 18 0.00 18 28 0 26 0.00 26 29 0 23 0.00 23 30 0 18 0.00 18 31 0 22 0.00 22 32 0 19 0.00 19 33 0 18 0.00 18 34 0 20 0.00 20 35 0 17 0.00 17 36 1 28 3.45 29 37 0 15 0.00 15 38 0 23 0.00 23 39 1 23 4.17 24 40 0 22 0.00 22 41 0 8 0.00 8 42 0 17 0.00 17 43 0 20 0.00 20 44 0 15 0.00 15 45 0 18 0.00 18 46 0 19 0.00 19 47 0 13 0.00 13 48 1 22 4.35 23 49 0 24 0.00 24 50 0 19 0.00 19 51 0 16 0.00 16 52 0 18 0.00 18 53 0 21 0.00 21 54 0 18 0.00 18 55 0 18 0.00 18 56 0 8 0.00 8 57 0 11 0.00 11 58 0 10 0.00 10 59 0 9 0.00 9 60 0 15 0.00 15 61 0 13 0.00 13 62 0 15 0.00 15 63 0 18 0.00 18 64 0 19 0.00 19 65 0 14 0.00 14 66 0 16 0.00 16 67 0 13 0.00 13 68 0 15 0.00 15 69 0 7 0.00 7 70 0 12 0.00 12 71 0 8 0.00 8 72 0 9 0.00 9 73 0 14 0.00 14 74 0 14 0.00 14 75 0 8 0.00 8 76 0 8 0.00 8 77 1 7 12.50 8 78 0 8 0.00 8 79 0 11 0.00 11 80 0 13 0.00 13 81 0 5 0.00 5 82 0 9 0.00 9 83 0 5 0.00 5 84 0 7 0.00 7 85 0 7 0.00 7 86 0 10 0.00 10 87 0 4 0.00 4 88 0 9 0.00 9 89 0 9 0.00 9 90 1 11 8.33 12 91 0 12 0.00 12 92 0 9 0.00 9 93 0 11 0.00 11 94 0 9 0.00 9 95 0 4 0.00 4 96 0 12 0.00 12 97 0 4 0.00 4 98 0 4 0.00 4