/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-181_S16_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
420
Pairs without alignments under any condition
99580
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
17504
Methylated C's in CpG context
57
Methylated C's in CHG context
146
Methylated C's in CHH context
66
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
4851
Unmethylated C's in CHG context
4794
Unmethylated C's in CHH context
7590
Unmethylated C's in Unknown context
5
Percentage methylation (CpG context)
1.2%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
270
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
150
original bottom strand
Deduplication
Alignments analysed
420
Unique alignments
404
Duplicates removed
16
Duplicated alignments were found at 14 different positions
