EPI-176_S15_L003_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 1024 lines in total Total number of methylation call strings processed: 2048 Final Cytosine Methylation Report ================================= Total number of C's analysed: 28773 Total methylated C's in CpG context: 89 Total methylated C's in CHG context: 313 Total methylated C's in CHH context: 116 Total C to T conversions in CpG context: 8039 Total C to T conversions in CHG context: 7716 Total C to T conversions in CHH context: 12500 C methylated in CpG context: 1.1% C methylated in CHG context: 3.9% C methylated in CHH context: 0.9%