CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5 130 3.70 135 2 3 134 2.19 137 3 1 123 0.81 124 4 0 73 0.00 73 5 1 71 1.39 72 6 0 48 0.00 48 7 0 60 0.00 60 8 2 64 3.03 66 9 0 61 0.00 61 10 0 64 0.00 64 11 1 76 1.30 77 12 0 64 0.00 64 13 0 49 0.00 49 14 0 61 0.00 61 15 0 61 0.00 61 16 1 54 1.82 55 17 0 71 0.00 71 18 0 63 0.00 63 19 3 65 4.41 68 20 1 64 1.54 65 21 1 66 1.49 67 22 0 79 0.00 79 23 0 60 0.00 60 24 0 73 0.00 73 25 0 47 0.00 47 26 0 57 0.00 57 27 0 74 0.00 74 28 0 65 0.00 65 29 0 66 0.00 66 30 1 74 1.33 75 31 0 63 0.00 63 32 1 65 1.52 66 33 0 68 0.00 68 34 1 56 1.75 57 35 0 61 0.00 61 36 0 60 0.00 60 37 0 60 0.00 60 38 0 43 0.00 43 39 0 63 0.00 63 40 2 64 3.03 66 41 0 70 0.00 70 42 1 60 1.64 61 43 1 51 1.92 52 44 1 64 1.54 65 45 0 57 0.00 57 46 1 51 1.92 52 47 2 56 3.45 58 48 0 69 0.00 69 49 1 67 1.47 68 50 0 64 0.00 64 51 0 85 0.00 85 52 0 61 0.00 61 53 0 72 0.00 72 54 1 70 1.41 71 55 0 53 0.00 53 56 0 58 0.00 58 57 1 60 1.64 61 58 1 79 1.25 80 59 1 82 1.20 83 60 0 72 0.00 72 61 3 64 4.48 67 62 0 51 0.00 51 63 2 63 3.08 65 64 0 57 0.00 57 65 1 47 2.08 48 66 0 47 0.00 47 67 1 55 1.79 56 68 1 44 2.22 45 69 0 43 0.00 43 70 0 66 0.00 66 71 1 58 1.69 59 72 0 47 0.00 47 73 1 46 2.13 47 74 3 60 4.76 63 75 0 61 0.00 61 76 0 48 0.00 48 77 0 52 0.00 52 78 1 44 2.22 45 79 1 50 1.96 51 80 0 49 0.00 49 81 1 79 1.25 80 82 1 52 1.89 53 83 2 50 3.85 52 84 0 52 0.00 52 85 0 56 0.00 56 86 1 52 1.89 53 87 0 50 0.00 50 88 1 41 2.38 42 89 0 32 0.00 32 90 0 36 0.00 36 91 1 58 1.69 59 92 0 45 0.00 45 93 0 55 0.00 55 94 0 40 0.00 40 95 0 37 0.00 37 96 0 41 0.00 41 97 0 31 0.00 31 98 1 47 2.08 48 99 1 36 2.70 37 100 1 53 1.85 54 101 1 34 2.86 35 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 76 34 69.09 110 2 35 38 47.95 73 3 15 45 25.00 60 4 7 62 10.14 69 5 4 51 7.27 55 6 3 38 7.32 41 7 3 78 3.70 81 8 1 47 2.08 48 9 0 50 0.00 50 10 1 52 1.89 53 11 4 62 6.06 66 12 1 60 1.64 61 13 1 62 1.59 63 14 0 51 0.00 51 15 2 49 3.92 51 16 1 72 1.37 73 17 0 63 0.00 63 18 1 57 1.72 58 19 1 55 1.79 56 20 0 45 0.00 45 21 0 75 0.00 75 22 1 62 1.59 63 23 1 63 1.56 64 24 1 60 1.64 61 25 0 64 0.00 64 26 0 76 0.00 76 27 2 89 2.20 91 28 2 73 2.67 75 29 1 73 1.35 74 30 1 61 1.61 62 31 1 60 1.64 61 32 1 50 1.96 51 33 1 68 1.45 69 34 0 65 0.00 65 35 2 73 2.67 75 36 0 84 0.00 84 37 2 79 2.47 81 38 2 81 2.41 83 39 1 64 1.54 65 40 0 72 0.00 72 41 0 66 0.00 66 42 0 78 0.00 78 43 0 59 0.00 59 44 2 59 3.28 61 45 1 54 1.82 55 46 4 52 7.14 56 47 1 67 1.47 68 48 1 50 1.96 51 49 2 51 3.77 53 50 0 55 0.00 55 51 0 61 0.00 61 52 1 64 1.54 65 53 3 56 5.08 59 54 1 65 1.52 66 55 1 58 1.69 59 56 2 69 2.82 71 57 1 61 1.61 62 58 1 62 1.59 63 59 0 55 0.00 55 60 1 61 1.61 62 61 2 65 2.99 67 62 1 71 1.39 72 63 1 75 1.32 76 64 1 50 1.96 51 65 0 43 0.00 43 66 1 60 1.64 61 67 1 55 1.79 56 68 1 51 1.92 52 69 0 70 0.00 70 70 2 74 2.63 76 71 0 49 0.00 49 72 4 48 7.69 52 73 2 51 3.77 53 74 1 52 1.89 53 75 3 58 4.92 61 76 1 57 1.72 58 77 0 50 0.00 50 78 1 55 1.79 56 79 3 62 4.62 65 80 1 74 1.33 75 81 0 53 0.00 53 82 0 49 0.00 49 83 2 45 4.26 47 84 2 50 3.85 52 85 0 32 0.00 32 86 0 42 0.00 42 87 1 52 1.89 53 88 0 38 0.00 38 89 0 42 0.00 42 90 3 44 6.38 47 91 3 35 7.89 38 92 2 54 3.57 56 93 3 38 7.32 41 94 1 48 2.04 49 95 2 48 4.00 50 96 2 33 5.71 35 97 0 36 0.00 36 98 1 40 2.44 41 99 2 26 7.14 28 100 1 24 4.00 25 101 3 40 6.98 43 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 36 23.40 47 2 8 20 28.57 28 3 4 60 6.25 64 4 2 61 3.17 63 5 1 87 1.14 88 6 2 80 2.44 82 7 2 94 2.08 96 8 0 99 0.00 99 9 3 86 3.37 89 10 0 86 0.00 86 11 1 79 1.25 80 12 0 91 0.00 91 13 0 87 0.00 87 14 0 92 0.00 92 15 1 106 0.93 107 16 0 111 0.00 111 17 0 116 0.00 116 18 0 113 0.00 113 19 1 107 0.93 108 20 0 112 0.00 112 21 1 117 0.85 118 22 1 101 0.98 102 23 1 113 0.88 114 24 4 106 3.64 110 25 0 107 0.00 107 26 0 117 0.00 117 27 1 116 0.85 117 28 0 114 0.00 114 29 1 112 0.88 113 30 2 93 2.11 95 31 1 121 0.82 122 32 0 133 0.00 133 33 1 124 0.80 125 34 0 105 0.00 105 35 0 106 0.00 106 36 0 73 0.00 73 37 0 88 0.00 88 38 2 88 2.22 90 39 0 91 0.00 91 40 1 80 1.23 81 41 0 94 0.00 94 42 0 100 0.00 100 43 1 102 0.97 103 44 1 118 0.84 119 45 1 123 0.81 124 46 0 120 0.00 120 47 0 119 0.00 119 48 0 129 0.00 129 49 0 89 0.00 89 50 0 106 0.00 106 51 0 102 0.00 102 52 1 108 0.92 109 53 0 102 0.00 102 54 0 112 0.00 112 55 0 103 0.00 103 56 0 113 0.00 113 57 2 96 2.04 98 58 3 88 3.30 91 59 0 95 0.00 95 60 0 107 0.00 107 61 0 100 0.00 100 62 1 97 1.02 98 63 0 89 0.00 89 64 0 80 0.00 80 65 0 82 0.00 82 66 1 102 0.97 103 67 1 92 1.08 93 68 0 84 0.00 84 69 2 102 1.92 104 70 1 94 1.05 95 71 0 96 0.00 96 72 1 96 1.03 97 73 1 88 1.12 89 74 0 104 0.00 104 75 1 81 1.22 82 76 0 89 0.00 89 77 0 87 0.00 87 78 1 93 1.06 94 79 1 92 1.08 93 80 0 75 0.00 75 81 0 70 0.00 70 82 0 77 0.00 77 83 0 72 0.00 72 84 2 60 3.23 62 85 0 77 0.00 77 86 0 73 0.00 73 87 1 72 1.37 73 88 1 77 1.28 78 89 1 69 1.43 70 90 1 80 1.23 81 91 0 63 0.00 63 92 2 62 3.12 64 93 1 75 1.32 76 94 1 63 1.56 64 95 1 58 1.69 59 96 1 54 1.82 55 97 0 66 0.00 66 98 0 50 0.00 50 99 0 41 0.00 41 100 1 36 2.70 37 101 0 49 0.00 49 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 25 13.79 29 2 5 37 11.90 42 3 6 57 9.52 63 4 5 35 12.50 40 5 0 66 0.00 66 6 0 27 0.00 27 7 0 38 0.00 38 8 0 29 0.00 29 9 1 50 1.96 51 10 0 37 0.00 37 11 1 33 2.94 34 12 0 36 0.00 36 13 0 24 0.00 24 14 0 34 0.00 34 15 0 36 0.00 36 16 0 20 0.00 20 17 0 46 0.00 46 18 0 34 0.00 34 19 0 27 0.00 27 20 0 36 0.00 36 21 0 35 0.00 35 22 0 24 0.00 24 23 0 33 0.00 33 24 0 26 0.00 26 25 0 37 0.00 37 26 0 38 0.00 38 27 0 24 0.00 24 28 0 32 0.00 32 29 0 19 0.00 19 30 0 17 0.00 17 31 0 28 0.00 28 32 0 26 0.00 26 33 1 18 5.26 19 34 0 22 0.00 22 35 0 21 0.00 21 36 1 22 4.35 23 37 2 30 6.25 32 38 0 21 0.00 21 39 0 17 0.00 17 40 0 19 0.00 19 41 0 17 0.00 17 42 0 31 0.00 31 43 0 18 0.00 18 44 0 16 0.00 16 45 0 17 0.00 17 46 0 22 0.00 22 47 0 21 0.00 21 48 0 24 0.00 24 49 0 14 0.00 14 50 0 22 0.00 22 51 0 16 0.00 16 52 0 23 0.00 23 53 0 12 0.00 12 54 0 21 0.00 21 55 0 7 0.00 7 56 0 16 0.00 16 57 0 8 0.00 8 58 0 15 0.00 15 59 0 13 0.00 13 60 0 17 0.00 17 61 1 8 11.11 9 62 0 15 0.00 15 63 0 11 0.00 11 64 0 18 0.00 18 65 0 15 0.00 15 66 0 16 0.00 16 67 0 7 0.00 7 68 0 17 0.00 17 69 0 13 0.00 13 70 0 11 0.00 11 71 0 8 0.00 8 72 1 16 5.88 17 73 0 7 0.00 7 74 0 10 0.00 10 75 0 17 0.00 17 76 0 10 0.00 10 77 0 13 0.00 13 78 0 13 0.00 13 79 0 9 0.00 9 80 0 18 0.00 18 81 0 12 0.00 12 82 0 6 0.00 6 83 0 10 0.00 10 84 0 15 0.00 15 85 0 7 0.00 7 86 0 9 0.00 9 87 0 13 0.00 13 88 0 4 0.00 4 89 0 6 0.00 6 90 0 6 0.00 6 91 0 6 0.00 6 92 0 9 0.00 9 93 0 10 0.00 10 94 0 7 0.00 7 95 0 12 0.00 12 96 0 8 0.00 8 97 0 5 0.00 5 98 0 6 0.00 6 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 30 11.76 34 2 8 37 17.78 45 3 6 37 13.95 43 4 4 32 11.11 36 5 1 39 2.50 40 6 4 58 6.45 62 7 0 37 0.00 37 8 1 45 2.17 46 9 2 27 6.90 29 10 0 42 0.00 42 11 0 29 0.00 29 12 0 28 0.00 28 13 0 38 0.00 38 14 1 33 2.94 34 15 1 47 2.08 48 16 0 19 0.00 19 17 0 31 0.00 31 18 1 30 3.23 31 19 0 27 0.00 27 20 0 19 0.00 19 21 0 19 0.00 19 22 1 29 3.33 30 23 0 36 0.00 36 24 0 33 0.00 33 25 1 25 3.85 26 26 0 32 0.00 32 27 0 22 0.00 22 28 0 31 0.00 31 29 1 32 3.03 33 30 0 29 0.00 29 31 1 18 5.26 19 32 1 27 3.57 28 33 1 26 3.70 27 34 0 31 0.00 31 35 0 11 0.00 11 36 1 22 4.35 23 37 0 27 0.00 27 38 0 25 0.00 25 39 0 19 0.00 19 40 0 19 0.00 19 41 1 21 4.55 22 42 1 11 8.33 12 43 0 18 0.00 18 44 0 18 0.00 18 45 0 18 0.00 18 46 0 24 0.00 24 47 0 28 0.00 28 48 0 30 0.00 30 49 0 24 0.00 24 50 0 19 0.00 19 51 0 29 0.00 29 52 1 13 7.14 14 53 0 16 0.00 16 54 0 18 0.00 18 55 0 18 0.00 18 56 1 19 5.00 20 57 0 21 0.00 21 58 0 15 0.00 15 59 0 25 0.00 25 60 0 12 0.00 12 61 0 16 0.00 16 62 0 9 0.00 9 63 0 8 0.00 8 64 0 10 0.00 10 65 1 11 8.33 12 66 1 16 5.88 17 67 1 8 11.11 9 68 4 20 16.67 24 69 0 15 0.00 15 70 2 16 11.11 18 71 0 14 0.00 14 72 0 8 0.00 8 73 0 12 0.00 12 74 1 9 10.00 10 75 1 13 7.14 14 76 0 10 0.00 10 77 1 5 16.67 6 78 1 10 9.09 11 79 0 12 0.00 12 80 0 11 0.00 11 81 0 9 0.00 9 82 0 17 0.00 17 83 1 12 7.69 13 84 1 13 7.14 14 85 1 13 7.14 14 86 0 11 0.00 11 87 0 12 0.00 12 88 0 7 0.00 7 89 0 13 0.00 13 90 0 8 0.00 8 91 0 12 0.00 12 92 0 7 0.00 7 93 0 7 0.00 7 94 0 7 0.00 7 95 0 6 0.00 6 96 0 14 0.00 14 97 2 5 28.57 7 98 0 10 0.00 10 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 23 8.00 25 2 0 19 0.00 19 3 1 13 7.14 14 4 6 17 26.09 23 5 1 35 2.78 36 6 0 33 0.00 33 7 1 50 1.96 51 8 1 53 1.85 54 9 0 64 0.00 64 10 1 59 1.67 60 11 0 67 0.00 67 12 0 66 0.00 66 13 0 70 0.00 70 14 0 48 0.00 48 15 1 59 1.67 60 16 1 55 1.79 56 17 0 53 0.00 53 18 0 56 0.00 56 19 0 42 0.00 42 20 0 27 0.00 27 21 0 40 0.00 40 22 0 35 0.00 35 23 0 49 0.00 49 24 0 43 0.00 43 25 0 42 0.00 42 26 2 50 3.85 52 27 0 39 0.00 39 28 0 48 0.00 48 29 0 58 0.00 58 30 0 41 0.00 41 31 0 49 0.00 49 32 2 35 5.41 37 33 0 60 0.00 60 34 0 58 0.00 58 35 1 30 3.23 31 36 0 43 0.00 43 37 1 33 2.94 34 38 0 37 0.00 37 39 2 41 4.65 43 40 0 46 0.00 46 41 0 30 0.00 30 42 0 29 0.00 29 43 0 31 0.00 31 44 0 40 0.00 40 45 1 41 2.38 42 46 1 36 2.70 37 47 0 40 0.00 40 48 1 37 2.63 38 49 0 45 0.00 45 50 0 34 0.00 34 51 0 31 0.00 31 52 1 37 2.63 38 53 0 39 0.00 39 54 1 35 2.78 36 55 0 32 0.00 32 56 0 26 0.00 26 57 0 31 0.00 31 58 0 19 0.00 19 59 0 28 0.00 28 60 0 28 0.00 28 61 1 41 2.38 42 62 0 28 0.00 28 63 0 29 0.00 29 64 0 35 0.00 35 65 0 26 0.00 26 66 0 26 0.00 26 67 0 24 0.00 24 68 0 29 0.00 29 69 0 30 0.00 30 70 0 33 0.00 33 71 1 30 3.23 31 72 0 31 0.00 31 73 0 19 0.00 19 74 0 30 0.00 30 75 0 35 0.00 35 76 0 23 0.00 23 77 0 25 0.00 25 78 0 23 0.00 23 79 0 30 0.00 30 80 0 27 0.00 27 81 0 19 0.00 19 82 0 24 0.00 24 83 0 20 0.00 20 84 0 23 0.00 23 85 0 15 0.00 15 86 0 26 0.00 26 87 0 26 0.00 26 88 0 25 0.00 25 89 0 17 0.00 17 90 0 17 0.00 17 91 0 14 0.00 14 92 0 10 0.00 10 93 0 19 0.00 19 94 0 12 0.00 12 95 0 26 0.00 26 96 0 17 0.00 17 97 0 19 0.00 19 98 1 21 4.55 22