/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
1154
Pairs without alignments under any condition
98846
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
47248
Methylated C's in CpG context
158
Methylated C's in CHG context
516
Methylated C's in CHH context
187
Methylated C's in Unknown context
0
Unmethylated C's in CpG context
13283
Unmethylated C's in CHG context
12806
Unmethylated C's in CHH context
20298
Unmethylated C's in Unknown context
24
Percentage methylation (CpG context)
1.2%
Percentage methylation (CHG context)
3.9%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
765
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
389
original bottom strand
Deduplication
Alignments analysed
1154
Unique alignments
1024
Duplicates removed
130
Duplicated alignments were found at 81 different positions
