CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 78 0.00 78 2 1 104 0.95 105 3 3 97 3.00 100 4 1 52 1.89 53 5 0 52 0.00 52 6 2 25 7.41 27 7 0 38 0.00 38 8 0 43 0.00 43 9 0 55 0.00 55 10 0 45 0.00 45 11 0 33 0.00 33 12 1 34 2.86 35 13 0 50 0.00 50 14 0 41 0.00 41 15 0 32 0.00 32 16 0 41 0.00 41 17 0 46 0.00 46 18 0 32 0.00 32 19 0 43 0.00 43 20 1 48 2.04 49 21 0 56 0.00 56 22 0 43 0.00 43 23 0 46 0.00 46 24 0 48 0.00 48 25 0 37 0.00 37 26 0 48 0.00 48 27 0 46 0.00 46 28 0 44 0.00 44 29 2 31 6.06 33 30 0 47 0.00 47 31 0 39 0.00 39 32 1 30 3.23 31 33 0 47 0.00 47 34 0 47 0.00 47 35 1 57 1.72 58 36 0 44 0.00 44 37 0 39 0.00 39 38 1 52 1.89 53 39 0 50 0.00 50 40 0 48 0.00 48 41 0 39 0.00 39 42 0 42 0.00 42 43 0 30 0.00 30 44 0 40 0.00 40 45 0 36 0.00 36 46 0 38 0.00 38 47 0 36 0.00 36 48 0 46 0.00 46 49 3 59 4.84 62 50 0 45 0.00 45 51 0 58 0.00 58 52 1 46 2.13 47 53 0 43 0.00 43 54 1 42 2.33 43 55 0 49 0.00 49 56 0 39 0.00 39 57 0 58 0.00 58 58 0 49 0.00 49 59 1 61 1.61 62 60 1 53 1.85 54 61 1 42 2.33 43 62 0 35 0.00 35 63 0 51 0.00 51 64 0 39 0.00 39 65 1 33 2.94 34 66 0 41 0.00 41 67 0 53 0.00 53 68 0 38 0.00 38 69 1 38 2.56 39 70 0 37 0.00 37 71 0 41 0.00 41 72 0 45 0.00 45 73 0 30 0.00 30 74 0 45 0.00 45 75 0 45 0.00 45 76 0 49 0.00 49 77 0 29 0.00 29 78 0 28 0.00 28 79 0 33 0.00 33 80 0 36 0.00 36 81 2 52 3.70 54 82 0 31 0.00 31 83 0 46 0.00 46 84 0 39 0.00 39 85 1 30 3.23 31 86 0 40 0.00 40 87 0 34 0.00 34 88 0 31 0.00 31 89 0 28 0.00 28 90 0 23 0.00 23 91 0 37 0.00 37 92 0 30 0.00 30 93 1 19 5.00 20 94 1 26 3.70 27 95 0 22 0.00 22 96 2 24 7.69 26 97 0 27 0.00 27 98 0 31 0.00 31 99 1 34 2.86 35 100 0 28 0.00 28 101 1 30 3.23 31 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 51 33 60.71 84 2 33 21 61.11 54 3 4 25 13.79 29 4 3 46 6.12 49 5 1 35 2.78 36 6 3 25 10.71 28 7 5 41 10.87 46 8 1 49 2.00 50 9 0 35 0.00 35 10 1 38 2.56 39 11 2 57 3.39 59 12 3 39 7.14 42 13 0 46 0.00 46 14 1 51 1.92 52 15 0 36 0.00 36 16 1 42 2.33 43 17 2 63 3.08 65 18 1 46 2.13 47 19 1 32 3.03 33 20 0 47 0.00 47 21 1 37 2.63 38 22 0 32 0.00 32 23 1 46 2.13 47 24 1 43 2.27 44 25 1 43 2.27 44 26 0 40 0.00 40 27 1 41 2.38 42 28 0 60 0.00 60 29 0 51 0.00 51 30 1 43 2.27 44 31 1 34 2.86 35 32 0 48 0.00 48 33 2 41 4.65 43 34 1 42 2.33 43 35 0 47 0.00 47 36 0 54 0.00 54 37 0 50 0.00 50 38 0 38 0.00 38 39 0 41 0.00 41 40 0 41 0.00 41 41 0 55 0.00 55 42 0 50 0.00 50 43 0 43 0.00 43 44 1 47 2.08 48 45 0 30 0.00 30 46 0 35 0.00 35 47 0 51 0.00 51 48 2 44 4.35 46 49 0 38 0.00 38 50 0 28 0.00 28 51 1 36 2.70 37 52 1 53 1.85 54 53 1 40 2.44 41 54 2 50 3.85 52 55 1 36 2.70 37 56 0 32 0.00 32 57 1 37 2.63 38 58 2 45 4.26 47 59 0 44 0.00 44 60 0 47 0.00 47 61 0 30 0.00 30 62 0 50 0.00 50 63 0 40 0.00 40 64 0 45 0.00 45 65 0 39 0.00 39 66 1 47 2.08 48 67 0 46 0.00 46 68 0 45 0.00 45 69 1 42 2.33 43 70 1 45 2.17 46 71 1 40 2.44 41 72 0 34 0.00 34 73 1 33 2.94 34 74 0 41 0.00 41 75 1 32 3.03 33 76 0 29 0.00 29 77 1 38 2.56 39 78 0 37 0.00 37 79 1 31 3.12 32 80 0 36 0.00 36 81 3 38 7.32 41 82 0 39 0.00 39 83 0 30 0.00 30 84 0 26 0.00 26 85 1 26 3.70 27 86 1 35 2.78 36 87 1 25 3.85 26 88 1 23 4.17 24 89 0 20 0.00 20 90 3 25 10.71 28 91 1 25 3.85 26 92 0 28 0.00 28 93 4 24 14.29 28 94 0 19 0.00 19 95 0 38 0.00 38 96 1 24 4.00 25 97 0 34 0.00 34 98 2 25 7.41 27 99 0 17 0.00 17 100 0 20 0.00 20 101 0 38 0.00 38 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 15 19 44.12 34 2 6 12 33.33 18 3 1 38 2.56 39 4 2 27 6.90 29 5 3 53 5.36 56 6 2 48 4.00 50 7 0 62 0.00 62 8 1 61 1.61 62 9 0 61 0.00 61 10 1 58 1.69 59 11 1 54 1.82 55 12 1 58 1.69 59 13 1 78 1.27 79 14 1 80 1.23 81 15 1 66 1.49 67 16 2 72 2.70 74 17 0 75 0.00 75 18 2 68 2.86 70 19 3 71 4.05 74 20 0 59 0.00 59 21 0 57 0.00 57 22 0 60 0.00 60 23 0 64 0.00 64 24 0 78 0.00 78 25 0 79 0.00 79 26 0 83 0.00 83 27 0 83 0.00 83 28 0 82 0.00 82 29 2 89 2.20 91 30 0 69 0.00 69 31 0 77 0.00 77 32 1 93 1.06 94 33 1 87 1.14 88 34 0 75 0.00 75 35 0 62 0.00 62 36 0 58 0.00 58 37 1 51 1.92 52 38 1 69 1.43 70 39 0 62 0.00 62 40 0 61 0.00 61 41 0 69 0.00 69 42 1 70 1.41 71 43 2 87 2.25 89 44 0 79 0.00 79 45 0 74 0.00 74 46 2 87 2.25 89 47 0 81 0.00 81 48 0 76 0.00 76 49 2 73 2.67 75 50 0 67 0.00 67 51 0 74 0.00 74 52 0 70 0.00 70 53 0 77 0.00 77 54 0 73 0.00 73 55 0 72 0.00 72 56 0 57 0.00 57 57 0 73 0.00 73 58 0 49 0.00 49 59 0 57 0.00 57 60 0 60 0.00 60 61 0 58 0.00 58 62 2 64 3.03 66 63 0 87 0.00 87 64 1 71 1.39 72 65 0 69 0.00 69 66 1 55 1.79 56 67 0 53 0.00 53 68 0 74 0.00 74 69 0 56 0.00 56 70 0 62 0.00 62 71 1 51 1.92 52 72 0 55 0.00 55 73 0 49 0.00 49 74 0 68 0.00 68 75 1 56 1.75 57 76 0 59 0.00 59 77 1 69 1.43 70 78 1 63 1.56 64 79 0 58 0.00 58 80 0 69 0.00 69 81 0 55 0.00 55 82 0 43 0.00 43 83 1 54 1.82 55 84 0 48 0.00 48 85 1 51 1.92 52 86 0 36 0.00 36 87 0 36 0.00 36 88 0 49 0.00 49 89 0 42 0.00 42 90 0 48 0.00 48 91 0 62 0.00 62 92 0 46 0.00 46 93 0 50 0.00 50 94 0 45 0.00 45 95 0 46 0.00 46 96 1 57 1.72 58 97 0 41 0.00 41 98 0 42 0.00 42 99 0 28 0.00 28 100 0 35 0.00 35 101 0 37 0.00 37 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 13 13.33 15 2 5 22 18.52 27 3 4 29 12.12 33 4 4 21 16.00 25 5 0 52 0.00 52 6 0 24 0.00 24 7 0 15 0.00 15 8 0 29 0.00 29 9 0 24 0.00 24 10 0 29 0.00 29 11 0 20 0.00 20 12 1 22 4.35 23 13 0 13 0.00 13 14 0 10 0.00 10 15 0 18 0.00 18 16 0 19 0.00 19 17 1 25 3.85 26 18 0 26 0.00 26 19 0 20 0.00 20 20 0 27 0.00 27 21 0 23 0.00 23 22 0 7 0.00 7 23 0 27 0.00 27 24 1 21 4.55 22 25 0 24 0.00 24 26 0 21 0.00 21 27 0 17 0.00 17 28 0 11 0.00 11 29 0 18 0.00 18 30 0 16 0.00 16 31 0 24 0.00 24 32 0 19 0.00 19 33 0 7 0.00 7 34 0 14 0.00 14 35 0 15 0.00 15 36 1 12 7.69 13 37 1 22 4.35 23 38 0 10 0.00 10 39 0 11 0.00 11 40 0 11 0.00 11 41 0 10 0.00 10 42 0 12 0.00 12 43 0 13 0.00 13 44 0 11 0.00 11 45 1 9 10.00 10 46 0 9 0.00 9 47 0 12 0.00 12 48 0 13 0.00 13 49 0 10 0.00 10 50 0 18 0.00 18 51 0 9 0.00 9 52 0 12 0.00 12 53 0 8 0.00 8 54 0 10 0.00 10 55 0 15 0.00 15 56 0 12 0.00 12 57 0 12 0.00 12 58 0 12 0.00 12 59 0 14 0.00 14 60 0 7 0.00 7 61 0 12 0.00 12 62 0 6 0.00 6 63 0 10 0.00 10 64 0 15 0.00 15 65 0 13 0.00 13 66 0 7 0.00 7 67 0 13 0.00 13 68 0 9 0.00 9 69 0 19 0.00 19 70 0 9 0.00 9 71 0 3 0.00 3 72 0 7 0.00 7 73 0 5 0.00 5 74 0 7 0.00 7 75 1 8 11.11 9 76 0 4 0.00 4 77 0 7 0.00 7 78 0 5 0.00 5 79 0 7 0.00 7 80 0 12 0.00 12 81 0 5 0.00 5 82 0 6 0.00 6 83 0 4 0.00 4 84 0 4 0.00 4 85 0 6 0.00 6 86 0 5 0.00 5 87 0 9 0.00 9 88 0 4 0.00 4 89 0 5 0.00 5 90 0 3 0.00 3 91 0 4 0.00 4 92 0 4 0.00 4 93 0 5 0.00 5 94 0 6 0.00 6 95 0 5 0.00 5 96 0 4 0.00 4 97 0 4 0.00 4 98 0 5 0.00 5 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 13 13.33 15 2 5 13 27.78 18 3 1 32 3.03 33 4 9 10 47.37 19 5 0 30 0.00 30 6 0 39 0.00 39 7 0 22 0.00 22 8 2 28 6.67 30 9 1 18 5.26 19 10 0 26 0.00 26 11 0 26 0.00 26 12 1 20 4.76 21 13 0 30 0.00 30 14 0 17 0.00 17 15 0 31 0.00 31 16 2 16 11.11 18 17 0 21 0.00 21 18 1 13 7.14 14 19 1 22 4.35 23 20 0 23 0.00 23 21 0 16 0.00 16 22 1 26 3.70 27 23 0 16 0.00 16 24 0 20 0.00 20 25 0 16 0.00 16 26 0 17 0.00 17 27 1 20 4.76 21 28 0 27 0.00 27 29 1 17 5.56 18 30 0 8 0.00 8 31 0 16 0.00 16 32 0 21 0.00 21 33 1 24 4.00 25 34 0 11 0.00 11 35 1 18 5.26 19 36 0 14 0.00 14 37 0 18 0.00 18 38 0 12 0.00 12 39 0 10 0.00 10 40 0 11 0.00 11 41 0 12 0.00 12 42 0 16 0.00 16 43 0 4 0.00 4 44 0 12 0.00 12 45 0 12 0.00 12 46 0 18 0.00 18 47 1 14 6.67 15 48 0 15 0.00 15 49 0 8 0.00 8 50 0 11 0.00 11 51 0 11 0.00 11 52 0 11 0.00 11 53 0 9 0.00 9 54 0 14 0.00 14 55 1 7 12.50 8 56 0 6 0.00 6 57 0 9 0.00 9 58 0 5 0.00 5 59 0 17 0.00 17 60 0 16 0.00 16 61 0 10 0.00 10 62 0 10 0.00 10 63 0 8 0.00 8 64 0 13 0.00 13 65 0 10 0.00 10 66 0 12 0.00 12 67 0 7 0.00 7 68 1 18 5.26 19 69 0 13 0.00 13 70 1 15 6.25 16 71 0 6 0.00 6 72 0 10 0.00 10 73 0 9 0.00 9 74 0 8 0.00 8 75 0 12 0.00 12 76 0 2 0.00 2 77 0 4 0.00 4 78 0 14 0.00 14 79 0 3 0.00 3 80 0 4 0.00 4 81 0 4 0.00 4 82 0 3 0.00 3 83 0 6 0.00 6 84 0 8 0.00 8 85 0 9 0.00 9 86 0 5 0.00 5 87 0 5 0.00 5 88 0 3 0.00 3 89 1 10 9.09 11 90 0 8 0.00 8 91 0 5 0.00 5 92 0 5 0.00 5 93 0 7 0.00 7 94 0 5 0.00 5 95 1 4 20.00 5 96 0 4 0.00 4 97 0 5 0.00 5 98 0 5 0.00 5 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 12 7.69 13 2 3 10 23.08 13 3 0 8 0.00 8 4 1 12 7.69 13 5 0 22 0.00 22 6 0 27 0.00 27 7 0 38 0.00 38 8 0 47 0.00 47 9 0 44 0.00 44 10 0 49 0.00 49 11 0 45 0.00 45 12 0 36 0.00 36 13 0 36 0.00 36 14 0 34 0.00 34 15 0 48 0.00 48 16 1 38 2.56 39 17 0 34 0.00 34 18 0 35 0.00 35 19 1 32 3.03 33 20 0 32 0.00 32 21 0 28 0.00 28 22 0 27 0.00 27 23 0 37 0.00 37 24 0 32 0.00 32 25 0 24 0.00 24 26 0 24 0.00 24 27 0 21 0.00 21 28 0 40 0.00 40 29 0 34 0.00 34 30 1 17 5.56 18 31 0 22 0.00 22 32 0 22 0.00 22 33 0 30 0.00 30 34 0 33 0.00 33 35 1 25 3.85 26 36 0 42 0.00 42 37 0 26 0.00 26 38 0 37 0.00 37 39 0 28 0.00 28 40 0 19 0.00 19 41 0 15 0.00 15 42 0 22 0.00 22 43 0 32 0.00 32 44 1 20 4.76 21 45 0 33 0.00 33 46 0 26 0.00 26 47 1 25 3.85 26 48 0 26 0.00 26 49 0 23 0.00 23 50 0 21 0.00 21 51 0 21 0.00 21 52 0 15 0.00 15 53 0 21 0.00 21 54 0 21 0.00 21 55 0 21 0.00 21 56 0 18 0.00 18 57 0 18 0.00 18 58 0 18 0.00 18 59 0 18 0.00 18 60 0 15 0.00 15 61 0 26 0.00 26 62 0 15 0.00 15 63 0 16 0.00 16 64 0 25 0.00 25 65 0 13 0.00 13 66 0 12 0.00 12 67 0 12 0.00 12 68 0 11 0.00 11 69 0 17 0.00 17 70 1 12 7.69 13 71 0 20 0.00 20 72 0 19 0.00 19 73 0 15 0.00 15 74 0 19 0.00 19 75 0 9 0.00 9 76 0 3 0.00 3 77 0 13 0.00 13 78 0 15 0.00 15 79 0 16 0.00 16 80 0 15 0.00 15 81 0 7 0.00 7 82 0 14 0.00 14 83 0 12 0.00 12 84 0 12 0.00 12 85 0 8 0.00 8 86 0 9 0.00 9 87 0 16 0.00 16 88 0 12 0.00 12 89 0 6 0.00 6 90 0 14 0.00 14 91 0 13 0.00 13 92 0 13 0.00 13 93 0 12 0.00 12 94 0 8 0.00 8 95 0 9 0.00 9 96 0 10 0.00 10 97 0 8 0.00 8 98 0 12 0.00 12