/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
792
Pairs without alignments under any condition
99208
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
32529
Methylated C's in CpG context
85
Methylated C's in CHG context
351
Methylated C's in CHH context
128
Methylated C's in Unknown context
4
Unmethylated C's in CpG context
9343
Unmethylated C's in CHG context
8875
Unmethylated C's in CHH context
13747
Unmethylated C's in Unknown context
5
Percentage methylation (CpG context)
0.9%
Percentage methylation (CHG context)
3.8%
Percentage methylation (CHH context)
0.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
543
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
249
original bottom strand
Deduplication
Alignments analysed
792
Unique alignments
701
Duplicates removed
91
Duplicated alignments were found at 61 different positions
