CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 55 1.79 56 2 1 72 1.37 73 3 1 45 2.17 46 4 0 37 0.00 37 5 0 37 0.00 37 6 0 19 0.00 19 7 0 24 0.00 24 8 0 19 0.00 19 9 0 30 0.00 30 10 0 22 0.00 22 11 0 35 0.00 35 12 0 20 0.00 20 13 1 22 4.35 23 14 0 28 0.00 28 15 0 23 0.00 23 16 0 27 0.00 27 17 1 25 3.85 26 18 0 19 0.00 19 19 0 28 0.00 28 20 0 34 0.00 34 21 0 33 0.00 33 22 2 37 5.13 39 23 1 30 3.23 31 24 0 28 0.00 28 25 0 28 0.00 28 26 0 28 0.00 28 27 0 33 0.00 33 28 0 27 0.00 27 29 0 27 0.00 27 30 1 38 2.56 39 31 0 22 0.00 22 32 0 25 0.00 25 33 0 26 0.00 26 34 1 23 4.17 24 35 0 39 0.00 39 36 0 26 0.00 26 37 0 29 0.00 29 38 1 23 4.17 24 39 0 28 0.00 28 40 2 25 7.41 27 41 0 23 0.00 23 42 0 18 0.00 18 43 0 26 0.00 26 44 0 24 0.00 24 45 0 27 0.00 27 46 1 21 4.55 22 47 0 26 0.00 26 48 0 26 0.00 26 49 0 22 0.00 22 50 0 26 0.00 26 51 1 33 2.94 34 52 0 22 0.00 22 53 0 28 0.00 28 54 0 22 0.00 22 55 0 30 0.00 30 56 0 20 0.00 20 57 0 24 0.00 24 58 0 33 0.00 33 59 0 35 0.00 35 60 0 20 0.00 20 61 1 25 3.85 26 62 0 22 0.00 22 63 0 20 0.00 20 64 1 13 7.14 14 65 0 24 0.00 24 66 0 19 0.00 19 67 1 22 4.35 23 68 0 24 0.00 24 69 0 20 0.00 20 70 0 24 0.00 24 71 0 26 0.00 26 72 0 12 0.00 12 73 0 15 0.00 15 74 0 15 0.00 15 75 0 10 0.00 10 76 0 16 0.00 16 77 0 16 0.00 16 78 0 23 0.00 23 79 1 13 7.14 14 80 1 15 6.25 16 81 0 28 0.00 28 82 0 18 0.00 18 83 0 22 0.00 22 84 0 13 0.00 13 85 0 18 0.00 18 86 0 4 0.00 4 87 0 17 0.00 17 88 0 23 0.00 23 89 0 14 0.00 14 90 0 12 0.00 12 91 1 18 5.26 19 92 0 7 0.00 7 93 1 16 5.88 17 94 0 17 0.00 17 95 0 9 0.00 9 96 0 5 0.00 5 97 0 17 0.00 17 98 0 13 0.00 13 99 0 11 0.00 11 100 0 13 0.00 13 101 0 11 0.00 11 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 30 23 56.60 53 2 18 15 54.55 33 3 7 22 24.14 29 4 5 31 13.89 36 5 4 20 16.67 24 6 0 23 0.00 23 7 1 33 2.94 34 8 0 26 0.00 26 9 0 15 0.00 15 10 1 36 2.70 37 11 0 30 0.00 30 12 0 22 0.00 22 13 0 32 0.00 32 14 1 36 2.70 37 15 0 23 0.00 23 16 1 20 4.76 21 17 0 26 0.00 26 18 1 26 3.70 27 19 0 34 0.00 34 20 0 19 0.00 19 21 0 20 0.00 20 22 0 30 0.00 30 23 1 29 3.33 30 24 0 26 0.00 26 25 0 32 0.00 32 26 1 28 3.45 29 27 0 37 0.00 37 28 0 30 0.00 30 29 0 27 0.00 27 30 2 25 7.41 27 31 0 20 0.00 20 32 1 28 3.45 29 33 0 23 0.00 23 34 0 37 0.00 37 35 1 20 4.76 21 36 0 36 0.00 36 37 0 29 0.00 29 38 1 23 4.17 24 39 1 28 3.45 29 40 0 27 0.00 27 41 1 17 5.56 18 42 0 33 0.00 33 43 0 24 0.00 24 44 0 22 0.00 22 45 1 25 3.85 26 46 2 21 8.70 23 47 0 30 0.00 30 48 2 19 9.52 21 49 0 25 0.00 25 50 0 19 0.00 19 51 0 20 0.00 20 52 1 23 4.17 24 53 0 27 0.00 27 54 0 30 0.00 30 55 0 21 0.00 21 56 0 28 0.00 28 57 0 34 0.00 34 58 0 25 0.00 25 59 0 23 0.00 23 60 0 20 0.00 20 61 2 18 10.00 20 62 0 28 0.00 28 63 0 21 0.00 21 64 0 19 0.00 19 65 1 19 5.00 20 66 2 19 9.52 21 67 0 22 0.00 22 68 0 17 0.00 17 69 2 21 8.70 23 70 1 16 5.88 17 71 2 16 11.11 18 72 1 15 6.25 16 73 1 12 7.69 13 74 2 16 11.11 18 75 1 20 4.76 21 76 1 25 3.85 26 77 1 8 11.11 9 78 0 20 0.00 20 79 0 20 0.00 20 80 0 22 0.00 22 81 0 16 0.00 16 82 1 18 5.26 19 83 1 9 10.00 10 84 0 14 0.00 14 85 1 12 7.69 13 86 1 12 7.69 13 87 0 16 0.00 16 88 2 10 16.67 12 89 2 12 14.29 14 90 3 16 15.79 19 91 1 11 8.33 12 92 1 15 6.25 16 93 0 12 0.00 12 94 0 13 0.00 13 95 0 13 0.00 13 96 0 7 0.00 7 97 2 16 11.11 18 98 0 8 0.00 8 99 1 5 16.67 6 100 0 8 0.00 8 101 1 11 8.33 12 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10 13 43.48 23 2 8 15 34.78 23 3 2 22 8.33 24 4 1 18 5.26 19 5 3 32 8.57 35 6 2 30 6.25 32 7 2 45 4.26 47 8 0 41 0.00 41 9 0 42 0.00 42 10 0 49 0.00 49 11 0 40 0.00 40 12 0 29 0.00 29 13 0 35 0.00 35 14 0 31 0.00 31 15 0 39 0.00 39 16 0 52 0.00 52 17 0 38 0.00 38 18 1 50 1.96 51 19 0 44 0.00 44 20 1 42 2.33 43 21 0 49 0.00 49 22 0 49 0.00 49 23 0 43 0.00 43 24 0 50 0.00 50 25 0 45 0.00 45 26 1 45 2.17 46 27 1 47 2.08 48 28 1 45 2.17 46 29 0 41 0.00 41 30 0 43 0.00 43 31 0 46 0.00 46 32 2 56 3.45 58 33 0 53 0.00 53 34 0 44 0.00 44 35 1 43 2.27 44 36 0 36 0.00 36 37 0 30 0.00 30 38 1 35 2.78 36 39 1 29 3.33 30 40 0 33 0.00 33 41 0 38 0.00 38 42 0 39 0.00 39 43 0 38 0.00 38 44 0 42 0.00 42 45 0 43 0.00 43 46 0 47 0.00 47 47 0 39 0.00 39 48 0 45 0.00 45 49 0 37 0.00 37 50 2 52 3.70 54 51 1 47 2.08 48 52 1 48 2.04 49 53 0 42 0.00 42 54 0 38 0.00 38 55 0 36 0.00 36 56 0 37 0.00 37 57 0 29 0.00 29 58 1 36 2.70 37 59 0 36 0.00 36 60 0 41 0.00 41 61 0 36 0.00 36 62 0 40 0.00 40 63 0 26 0.00 26 64 0 33 0.00 33 65 0 34 0.00 34 66 0 35 0.00 35 67 0 31 0.00 31 68 0 30 0.00 30 69 1 27 3.57 28 70 0 24 0.00 24 71 1 31 3.12 32 72 0 36 0.00 36 73 0 29 0.00 29 74 0 43 0.00 43 75 0 29 0.00 29 76 0 39 0.00 39 77 0 33 0.00 33 78 0 28 0.00 28 79 0 27 0.00 27 80 0 21 0.00 21 81 0 23 0.00 23 82 1 17 5.56 18 83 0 23 0.00 23 84 0 25 0.00 25 85 0 31 0.00 31 86 0 22 0.00 22 87 0 17 0.00 17 88 0 16 0.00 16 89 0 16 0.00 16 90 0 20 0.00 20 91 0 19 0.00 19 92 0 13 0.00 13 93 0 18 0.00 18 94 0 15 0.00 15 95 0 22 0.00 22 96 1 20 4.76 21 97 0 18 0.00 18 98 0 12 0.00 12 99 0 13 0.00 13 100 0 13 0.00 13 101 0 20 0.00 20 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 13 7.14 14 2 3 16 15.79 19 3 3 19 13.64 22 4 1 18 5.26 19 5 0 23 0.00 23 6 0 9 0.00 9 7 0 13 0.00 13 8 0 8 0.00 8 9 0 9 0.00 9 10 0 17 0.00 17 11 0 10 0.00 10 12 0 9 0.00 9 13 0 9 0.00 9 14 0 10 0.00 10 15 0 12 0.00 12 16 0 6 0.00 6 17 0 11 0.00 11 18 0 14 0.00 14 19 0 10 0.00 10 20 0 6 0.00 6 21 0 11 0.00 11 22 0 7 0.00 7 23 0 7 0.00 7 24 0 6 0.00 6 25 0 7 0.00 7 26 0 18 0.00 18 27 0 8 0.00 8 28 0 7 0.00 7 29 0 6 0.00 6 30 0 10 0.00 10 31 0 5 0.00 5 32 0 9 0.00 9 33 0 5 0.00 5 34 0 8 0.00 8 35 0 5 0.00 5 36 0 7 0.00 7 37 0 7 0.00 7 38 0 3 0.00 3 39 0 2 0.00 2 40 0 4 0.00 4 41 0 10 0.00 10 42 0 7 0.00 7 43 1 5 16.67 6 44 0 7 0.00 7 45 0 4 0.00 4 46 0 3 0.00 3 47 0 2 0.00 2 48 0 6 0.00 6 49 0 11 0.00 11 50 0 8 0.00 8 51 0 2 0.00 2 52 0 6 0.00 6 53 0 1 0.00 1 54 0 1 0.00 1 55 0 7 0.00 7 56 0 1 0.00 1 57 0 2 0.00 2 58 0 4 0.00 4 59 0 5 0.00 5 60 1 6 14.29 7 61 0 2 0.00 2 62 0 2 0.00 2 63 0 4 0.00 4 64 0 6 0.00 6 65 0 9 0.00 9 66 0 3 0.00 3 67 0 2 0.00 2 68 0 5 0.00 5 69 0 1 0.00 1 70 0 3 0.00 3 71 0 2 0.00 2 72 0 3 0.00 3 73 0 0 0 74 0 3 0.00 3 75 0 1 0.00 1 76 0 4 0.00 4 77 0 1 0.00 1 78 0 1 0.00 1 79 0 0 0 80 0 6 0.00 6 81 0 2 0.00 2 82 0 0 0 83 0 5 0.00 5 84 0 3 0.00 3 85 0 3 0.00 3 86 0 4 0.00 4 87 0 1 0.00 1 88 0 1 0.00 1 89 0 2 0.00 2 90 0 3 0.00 3 91 0 2 0.00 2 92 0 2 0.00 2 93 0 2 0.00 2 94 0 3 0.00 3 95 0 2 0.00 2 96 0 3 0.00 3 97 0 4 0.00 4 98 1 2 33.33 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 6 14.29 7 2 0 10 0.00 10 3 3 11 21.43 14 4 2 7 22.22 9 5 0 18 0.00 18 6 0 18 0.00 18 7 0 8 0.00 8 8 0 20 0.00 20 9 0 8 0.00 8 10 0 8 0.00 8 11 0 16 0.00 16 12 0 11 0.00 11 13 0 7 0.00 7 14 0 11 0.00 11 15 0 16 0.00 16 16 0 6 0.00 6 17 0 8 0.00 8 18 0 11 0.00 11 19 0 9 0.00 9 20 1 14 6.67 15 21 0 13 0.00 13 22 0 5 0.00 5 23 0 8 0.00 8 24 0 8 0.00 8 25 0 5 0.00 5 26 0 4 0.00 4 27 0 6 0.00 6 28 0 10 0.00 10 29 0 11 0.00 11 30 0 5 0.00 5 31 0 2 0.00 2 32 0 3 0.00 3 33 0 11 0.00 11 34 0 10 0.00 10 35 1 4 20.00 5 36 0 4 0.00 4 37 0 3 0.00 3 38 0 5 0.00 5 39 0 7 0.00 7 40 0 5 0.00 5 41 0 6 0.00 6 42 1 3 25.00 4 43 0 4 0.00 4 44 1 6 14.29 7 45 0 3 0.00 3 46 0 2 0.00 2 47 0 2 0.00 2 48 0 4 0.00 4 49 1 4 20.00 5 50 0 7 0.00 7 51 1 10 9.09 11 52 1 6 14.29 7 53 0 7 0.00 7 54 0 4 0.00 4 55 0 2 0.00 2 56 0 6 0.00 6 57 0 4 0.00 4 58 0 6 0.00 6 59 0 5 0.00 5 60 0 2 0.00 2 61 0 3 0.00 3 62 0 5 0.00 5 63 0 4 0.00 4 64 0 6 0.00 6 65 0 5 0.00 5 66 0 2 0.00 2 67 0 2 0.00 2 68 2 6 25.00 8 69 0 5 0.00 5 70 0 1 0.00 1 71 0 3 0.00 3 72 0 4 0.00 4 73 0 1 0.00 1 74 0 3 0.00 3 75 0 2 0.00 2 76 0 2 0.00 2 77 0 3 0.00 3 78 0 3 0.00 3 79 0 2 0.00 2 80 0 2 0.00 2 81 0 4 0.00 4 82 0 4 0.00 4 83 0 2 0.00 2 84 1 3 25.00 4 85 0 3 0.00 3 86 0 2 0.00 2 87 0 2 0.00 2 88 0 0 0 89 0 3 0.00 3 90 0 0 0 91 0 1 0.00 1 92 0 2 0.00 2 93 0 4 0.00 4 94 0 1 0.00 1 95 0 1 0.00 1 96 0 4 0.00 4 97 0 4 0.00 4 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 6 14.29 7 2 0 10 0.00 10 3 1 6 14.29 7 4 1 2 33.33 3 5 0 8 0.00 8 6 0 12 0.00 12 7 0 17 0.00 17 8 0 24 0.00 24 9 0 24 0.00 24 10 0 23 0.00 23 11 0 21 0.00 21 12 0 19 0.00 19 13 0 16 0.00 16 14 0 11 0.00 11 15 0 24 0.00 24 16 0 14 0.00 14 17 0 17 0.00 17 18 0 16 0.00 16 19 0 19 0.00 19 20 0 10 0.00 10 21 0 16 0.00 16 22 0 15 0.00 15 23 0 22 0.00 22 24 0 13 0.00 13 25 0 11 0.00 11 26 0 15 0.00 15 27 0 14 0.00 14 28 0 16 0.00 16 29 0 18 0.00 18 30 0 14 0.00 14 31 0 10 0.00 10 32 0 12 0.00 12 33 0 12 0.00 12 34 0 15 0.00 15 35 0 12 0.00 12 36 0 19 0.00 19 37 0 12 0.00 12 38 0 13 0.00 13 39 0 9 0.00 9 40 0 13 0.00 13 41 0 7 0.00 7 42 1 7 12.50 8 43 0 10 0.00 10 44 0 10 0.00 10 45 0 11 0.00 11 46 0 10 0.00 10 47 0 9 0.00 9 48 0 9 0.00 9 49 0 6 0.00 6 50 0 6 0.00 6 51 0 6 0.00 6 52 0 8 0.00 8 53 0 6 0.00 6 54 0 11 0.00 11 55 0 10 0.00 10 56 0 7 0.00 7 57 0 7 0.00 7 58 0 7 0.00 7 59 0 9 0.00 9 60 0 8 0.00 8 61 0 5 0.00 5 62 0 4 0.00 4 63 0 7 0.00 7 64 0 6 0.00 6 65 0 3 0.00 3 66 0 9 0.00 9 67 0 5 0.00 5 68 0 9 0.00 9 69 0 9 0.00 9 70 0 9 0.00 9 71 0 10 0.00 10 72 0 6 0.00 6 73 0 11 0.00 11 74 0 7 0.00 7 75 0 9 0.00 9 76 0 2 0.00 2 77 0 7 0.00 7 78 0 5 0.00 5 79 0 6 0.00 6 80 0 4 0.00 4 81 0 6 0.00 6 82 0 4 0.00 4 83 0 8 0.00 8 84 0 5 0.00 5 85 0 4 0.00 4 86 0 7 0.00 7 87 0 6 0.00 6 88 0 7 0.00 7 89 0 4 0.00 4 90 0 2 0.00 2 91 0 5 0.00 5 92 0 4 0.00 4 93 0 10 0.00 10 94 0 2 0.00 2 95 0 5 0.00 5 96 0 7 0.00 7 97 0 4 0.00 4 98 0 6 0.00 6