CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 0 46 0.00 46 2 0 32 0.00 32 3 1 38 2.56 39 4 1 33 2.94 34 5 1 28 3.45 29 6 0 13 0.00 13 7 0 21 0.00 21 8 0 15 0.00 15 9 1 22 4.35 23 10 0 18 0.00 18 11 0 23 0.00 23 12 0 15 0.00 15 13 0 16 0.00 16 14 0 18 0.00 18 15 0 23 0.00 23 16 0 18 0.00 18 17 0 20 0.00 20 18 1 19 5.00 20 19 0 19 0.00 19 20 0 24 0.00 24 21 0 22 0.00 22 22 0 20 0.00 20 23 0 20 0.00 20 24 0 18 0.00 18 25 0 26 0.00 26 26 0 17 0.00 17 27 0 24 0.00 24 28 0 25 0.00 25 29 1 15 6.25 16 30 0 14 0.00 14 31 1 15 6.25 16 32 0 22 0.00 22 33 1 19 5.00 20 34 0 21 0.00 21 35 0 25 0.00 25 36 0 17 0.00 17 37 0 26 0.00 26 38 0 17 0.00 17 39 0 13 0.00 13 40 0 18 0.00 18 41 1 18 5.26 19 42 0 19 0.00 19 43 0 17 0.00 17 44 0 14 0.00 14 45 0 17 0.00 17 46 1 16 5.88 17 47 0 12 0.00 12 48 0 24 0.00 24 49 0 16 0.00 16 50 0 18 0.00 18 51 1 20 4.76 21 52 0 12 0.00 12 53 0 15 0.00 15 54 0 14 0.00 14 55 0 18 0.00 18 56 0 15 0.00 15 57 0 26 0.00 26 58 0 27 0.00 27 59 1 25 3.85 26 60 1 22 4.35 23 61 0 12 0.00 12 62 1 13 7.14 14 63 1 14 6.67 15 64 0 13 0.00 13 65 0 9 0.00 9 66 0 14 0.00 14 67 1 16 5.88 17 68 0 12 0.00 12 69 0 19 0.00 19 70 0 18 0.00 18 71 0 8 0.00 8 72 0 22 0.00 22 73 0 11 0.00 11 74 0 12 0.00 12 75 1 7 12.50 8 76 0 15 0.00 15 77 0 13 0.00 13 78 0 6 0.00 6 79 0 11 0.00 11 80 1 12 7.69 13 81 0 19 0.00 19 82 0 19 0.00 19 83 0 10 0.00 10 84 0 12 0.00 12 85 0 8 0.00 8 86 1 6 14.29 7 87 1 10 9.09 11 88 0 15 0.00 15 89 0 14 0.00 14 90 0 10 0.00 10 91 2 16 11.11 18 92 0 7 0.00 7 93 0 6 0.00 6 94 0 11 0.00 11 95 0 4 0.00 4 96 0 13 0.00 13 97 1 7 12.50 8 98 0 12 0.00 12 99 1 13 7.14 14 100 0 9 0.00 9 101 0 14 0.00 14 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 21 7 75.00 28 2 7 9 43.75 16 3 6 19 24.00 25 4 6 22 21.43 28 5 1 8 11.11 9 6 1 9 10.00 10 7 1 14 6.67 15 8 0 13 0.00 13 9 2 12 14.29 14 10 0 12 0.00 12 11 1 22 4.35 23 12 0 10 0.00 10 13 0 14 0.00 14 14 1 16 5.88 17 15 0 10 0.00 10 16 0 15 0.00 15 17 0 23 0.00 23 18 1 10 9.09 11 19 0 19 0.00 19 20 1 17 5.56 18 21 0 15 0.00 15 22 0 26 0.00 26 23 0 28 0.00 28 24 0 20 0.00 20 25 0 16 0.00 16 26 0 20 0.00 20 27 1 20 4.76 21 28 0 16 0.00 16 29 1 16 5.88 17 30 1 20 4.76 21 31 1 22 4.35 23 32 0 21 0.00 21 33 0 17 0.00 17 34 1 25 3.85 26 35 0 19 0.00 19 36 1 21 4.55 22 37 0 27 0.00 27 38 1 12 7.69 13 39 0 23 0.00 23 40 1 25 3.85 26 41 0 20 0.00 20 42 0 16 0.00 16 43 0 16 0.00 16 44 1 17 5.56 18 45 1 19 5.00 20 46 0 12 0.00 12 47 1 23 4.17 24 48 0 24 0.00 24 49 0 15 0.00 15 50 0 9 0.00 9 51 0 17 0.00 17 52 0 16 0.00 16 53 0 18 0.00 18 54 0 24 0.00 24 55 0 11 0.00 11 56 0 14 0.00 14 57 0 21 0.00 21 58 1 16 5.88 17 59 1 20 4.76 21 60 1 15 6.25 16 61 0 18 0.00 18 62 0 15 0.00 15 63 0 25 0.00 25 64 0 16 0.00 16 65 0 20 0.00 20 66 0 12 0.00 12 67 1 17 5.56 18 68 0 9 0.00 9 69 1 16 5.88 17 70 0 16 0.00 16 71 1 14 6.67 15 72 0 10 0.00 10 73 0 14 0.00 14 74 0 10 0.00 10 75 0 13 0.00 13 76 0 11 0.00 11 77 0 14 0.00 14 78 0 13 0.00 13 79 0 10 0.00 10 80 0 14 0.00 14 81 0 15 0.00 15 82 0 19 0.00 19 83 0 15 0.00 15 84 0 10 0.00 10 85 1 6 14.29 7 86 1 12 7.69 13 87 0 16 0.00 16 88 2 13 13.33 15 89 0 8 0.00 8 90 1 11 8.33 12 91 0 8 0.00 8 92 1 9 10.00 10 93 0 7 0.00 7 94 0 12 0.00 12 95 0 15 0.00 15 96 0 10 0.00 10 97 0 5 0.00 5 98 1 12 7.69 13 99 0 8 0.00 8 100 0 8 0.00 8 101 2 6 25.00 8 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 4 4 50.00 8 2 1 10 9.09 11 3 1 15 6.25 16 4 1 14 6.67 15 5 2 21 8.70 23 6 0 16 0.00 16 7 0 30 0.00 30 8 1 29 3.33 30 9 1 30 3.23 31 10 0 26 0.00 26 11 0 27 0.00 27 12 0 35 0.00 35 13 0 40 0.00 40 14 1 35 2.78 36 15 0 27 0.00 27 16 0 39 0.00 39 17 0 45 0.00 45 18 0 32 0.00 32 19 0 34 0.00 34 20 0 27 0.00 27 21 0 22 0.00 22 22 0 23 0.00 23 23 0 26 0.00 26 24 0 38 0.00 38 25 0 25 0.00 25 26 1 33 2.94 34 27 0 34 0.00 34 28 0 24 0.00 24 29 0 40 0.00 40 30 0 40 0.00 40 31 0 37 0.00 37 32 4 34 10.53 38 33 0 34 0.00 34 34 1 29 3.33 30 35 0 35 0.00 35 36 0 28 0.00 28 37 0 21 0.00 21 38 0 25 0.00 25 39 0 23 0.00 23 40 0 19 0.00 19 41 0 24 0.00 24 42 1 20 4.76 21 43 0 27 0.00 27 44 0 28 0.00 28 45 0 29 0.00 29 46 0 35 0.00 35 47 0 28 0.00 28 48 1 37 2.63 38 49 0 26 0.00 26 50 2 21 8.70 23 51 0 34 0.00 34 52 0 35 0.00 35 53 0 41 0.00 41 54 0 25 0.00 25 55 0 31 0.00 31 56 0 19 0.00 19 57 0 23 0.00 23 58 0 20 0.00 20 59 0 36 0.00 36 60 0 25 0.00 25 61 0 21 0.00 21 62 0 19 0.00 19 63 0 22 0.00 22 64 0 19 0.00 19 65 0 16 0.00 16 66 0 23 0.00 23 67 0 26 0.00 26 68 2 22 8.33 24 69 0 19 0.00 19 70 0 25 0.00 25 71 0 21 0.00 21 72 1 25 3.85 26 73 0 20 0.00 20 74 0 25 0.00 25 75 0 17 0.00 17 76 1 26 3.70 27 77 0 28 0.00 28 78 0 32 0.00 32 79 0 31 0.00 31 80 0 22 0.00 22 81 0 15 0.00 15 82 0 15 0.00 15 83 0 18 0.00 18 84 1 16 5.88 17 85 0 16 0.00 16 86 1 18 5.26 19 87 0 23 0.00 23 88 0 17 0.00 17 89 1 11 8.33 12 90 1 9 10.00 10 91 0 16 0.00 16 92 0 18 0.00 18 93 0 20 0.00 20 94 0 21 0.00 21 95 1 11 8.33 12 96 1 14 6.67 15 97 0 22 0.00 22 98 0 8 0.00 8 99 0 6 0.00 6 100 0 5 0.00 5 101 0 13 0.00 13 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 5 37.50 8 2 1 12 7.69 13 3 2 15 11.76 17 4 3 8 27.27 11 5 1 17 5.56 18 6 0 5 0.00 5 7 0 11 0.00 11 8 0 12 0.00 12 9 0 8 0.00 8 10 0 8 0.00 8 11 0 8 0.00 8 12 0 10 0.00 10 13 0 7 0.00 7 14 0 9 0.00 9 15 0 10 0.00 10 16 0 7 0.00 7 17 0 7 0.00 7 18 0 7 0.00 7 19 0 4 0.00 4 20 0 7 0.00 7 21 0 4 0.00 4 22 0 5 0.00 5 23 0 7 0.00 7 24 0 9 0.00 9 25 0 7 0.00 7 26 0 7 0.00 7 27 0 2 0.00 2 28 0 6 0.00 6 29 0 6 0.00 6 30 0 4 0.00 4 31 0 8 0.00 8 32 0 7 0.00 7 33 0 4 0.00 4 34 0 1 0.00 1 35 0 7 0.00 7 36 0 6 0.00 6 37 0 4 0.00 4 38 0 5 0.00 5 39 0 6 0.00 6 40 0 1 0.00 1 41 0 4 0.00 4 42 0 5 0.00 5 43 0 2 0.00 2 44 0 6 0.00 6 45 0 3 0.00 3 46 0 5 0.00 5 47 0 2 0.00 2 48 0 4 0.00 4 49 0 5 0.00 5 50 0 1 0.00 1 51 0 3 0.00 3 52 0 5 0.00 5 53 0 5 0.00 5 54 0 2 0.00 2 55 0 1 0.00 1 56 0 0 0 57 0 4 0.00 4 58 0 3 0.00 3 59 0 10 0.00 10 60 0 1 0.00 1 61 0 3 0.00 3 62 0 3 0.00 3 63 0 2 0.00 2 64 0 4 0.00 4 65 0 7 0.00 7 66 0 6 0.00 6 67 1 1 50.00 2 68 0 3 0.00 3 69 0 2 0.00 2 70 0 1 0.00 1 71 0 3 0.00 3 72 0 2 0.00 2 73 0 4 0.00 4 74 0 1 0.00 1 75 0 2 0.00 2 76 0 2 0.00 2 77 0 2 0.00 2 78 0 1 0.00 1 79 0 4 0.00 4 80 0 1 0.00 1 81 0 3 0.00 3 82 0 2 0.00 2 83 0 2 0.00 2 84 0 2 0.00 2 85 0 1 0.00 1 86 0 2 0.00 2 87 0 0 0 88 0 5 0.00 5 89 0 3 0.00 3 90 0 2 0.00 2 91 0 0 0 92 0 2 0.00 2 93 0 2 0.00 2 94 0 1 0.00 1 95 0 2 0.00 2 96 0 4 0.00 4 97 0 0 0 98 0 2 0.00 2 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 5 28.57 7 2 5 9 35.71 14 3 5 8 38.46 13 4 1 5 16.67 6 5 0 10 0.00 10 6 0 8 0.00 8 7 0 6 0.00 6 8 1 8 11.11 9 9 0 10 0.00 10 10 0 10 0.00 10 11 0 7 0.00 7 12 0 6 0.00 6 13 0 7 0.00 7 14 0 9 0.00 9 15 0 8 0.00 8 16 0 4 0.00 4 17 1 8 11.11 9 18 0 5 0.00 5 19 1 7 12.50 8 20 0 4 0.00 4 21 0 5 0.00 5 22 0 6 0.00 6 23 0 7 0.00 7 24 0 8 0.00 8 25 0 4 0.00 4 26 0 7 0.00 7 27 0 2 0.00 2 28 0 1 0.00 1 29 0 7 0.00 7 30 0 6 0.00 6 31 0 6 0.00 6 32 0 5 0.00 5 33 0 7 0.00 7 34 0 5 0.00 5 35 0 0 0 36 0 4 0.00 4 37 0 6 0.00 6 38 0 5 0.00 5 39 0 5 0.00 5 40 0 3 0.00 3 41 0 3 0.00 3 42 1 6 14.29 7 43 0 3 0.00 3 44 0 6 0.00 6 45 1 10 9.09 11 46 0 5 0.00 5 47 0 7 0.00 7 48 0 7 0.00 7 49 0 6 0.00 6 50 0 1 0.00 1 51 0 4 0.00 4 52 0 1 0.00 1 53 0 9 0.00 9 54 0 5 0.00 5 55 0 3 0.00 3 56 0 2 0.00 2 57 0 2 0.00 2 58 0 0 0 59 0 6 0.00 6 60 0 8 0.00 8 61 0 4 0.00 4 62 1 3 25.00 4 63 0 4 0.00 4 64 0 0 0 65 0 3 0.00 3 66 0 2 0.00 2 67 1 4 20.00 5 68 0 2 0.00 2 69 0 6 0.00 6 70 0 1 0.00 1 71 0 4 0.00 4 72 0 1 0.00 1 73 0 1 0.00 1 74 0 1 0.00 1 75 1 1 50.00 2 76 0 3 0.00 3 77 0 3 0.00 3 78 0 1 0.00 1 79 0 2 0.00 2 80 0 3 0.00 3 81 0 0 0 82 0 4 0.00 4 83 0 2 0.00 2 84 0 2 0.00 2 85 0 3 0.00 3 86 0 3 0.00 3 87 1 2 33.33 3 88 0 1 0.00 1 89 0 2 0.00 2 90 0 2 0.00 2 91 0 4 0.00 4 92 0 1 0.00 1 93 0 4 0.00 4 94 0 2 0.00 2 95 0 1 0.00 1 96 0 0 0 97 0 2 0.00 2 98 0 2 0.00 2 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 1 0.00 1 2 1 6 14.29 7 3 0 7 0.00 7 4 1 6 14.29 7 5 0 7 0.00 7 6 0 11 0.00 11 7 0 18 0.00 18 8 0 15 0.00 15 9 0 17 0.00 17 10 0 16 0.00 16 11 0 11 0.00 11 12 0 12 0.00 12 13 0 14 0.00 14 14 0 4 0.00 4 15 0 11 0.00 11 16 0 9 0.00 9 17 0 8 0.00 8 18 0 16 0.00 16 19 0 16 0.00 16 20 0 16 0.00 16 21 0 10 0.00 10 22 1 8 11.11 9 23 0 6 0.00 6 24 0 13 0.00 13 25 0 7 0.00 7 26 0 13 0.00 13 27 0 7 0.00 7 28 0 7 0.00 7 29 0 8 0.00 8 30 0 3 0.00 3 31 0 4 0.00 4 32 0 9 0.00 9 33 0 13 0.00 13 34 0 11 0.00 11 35 0 14 0.00 14 36 0 10 0.00 10 37 0 3 0.00 3 38 0 6 0.00 6 39 0 8 0.00 8 40 0 8 0.00 8 41 0 7 0.00 7 42 0 3 0.00 3 43 0 7 0.00 7 44 0 6 0.00 6 45 0 2 0.00 2 46 0 12 0.00 12 47 0 5 0.00 5 48 0 6 0.00 6 49 0 6 0.00 6 50 0 5 0.00 5 51 0 5 0.00 5 52 0 12 0.00 12 53 0 7 0.00 7 54 0 11 0.00 11 55 0 5 0.00 5 56 0 4 0.00 4 57 0 10 0.00 10 58 0 2 0.00 2 59 0 6 0.00 6 60 0 2 0.00 2 61 0 7 0.00 7 62 0 6 0.00 6 63 0 8 0.00 8 64 0 8 0.00 8 65 0 4 0.00 4 66 0 6 0.00 6 67 0 6 0.00 6 68 0 8 0.00 8 69 1 5 16.67 6 70 0 8 0.00 8 71 0 9 0.00 9 72 0 7 0.00 7 73 0 7 0.00 7 74 0 4 0.00 4 75 0 5 0.00 5 76 0 7 0.00 7 77 0 6 0.00 6 78 0 5 0.00 5 79 0 4 0.00 4 80 0 7 0.00 7 81 0 5 0.00 5 82 0 7 0.00 7 83 0 4 0.00 4 84 0 3 0.00 3 85 0 2 0.00 2 86 0 4 0.00 4 87 0 7 0.00 7 88 0 4 0.00 4 89 0 2 0.00 2 90 0 2 0.00 2 91 0 4 0.00 4 92 0 3 0.00 3 93 0 3 0.00 3 94 0 3 0.00 3 95 0 5 0.00 5 96 0 1 0.00 1 97 1 3 25.00 4 98 0 8 0.00 8