/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
322
Pairs without alignments under any condition
99678
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
12209
Methylated C's in CpG context
55
Methylated C's in CHG context
153
Methylated C's in CHH context
62
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
3518
Unmethylated C's in CHG context
3274
Unmethylated C's in CHH context
5147
Unmethylated C's in Unknown context
0
Percentage methylation (CpG context)
1.5%
Percentage methylation (CHG context)
4.5%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
220
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
102
original bottom strand
Deduplication
Alignments analysed
322
Unique alignments
306
Duplicates removed
16
Duplicated alignments were found at 12 different positions
