CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 54 5.26 57 2 2 74 2.63 76 3 1 72 1.37 73 4 1 65 1.52 66 5 0 65 0.00 65 6 4 43 8.51 47 7 3 59 4.84 62 8 0 45 0.00 45 9 1 52 1.89 53 10 2 68 2.86 70 11 1 46 2.13 47 12 1 66 1.49 67 13 1 52 1.89 53 14 1 56 1.75 57 15 1 59 1.67 60 16 1 59 1.67 60 17 0 45 0.00 45 18 2 51 3.77 53 19 1 64 1.54 65 20 1 56 1.75 57 21 3 64 4.48 67 22 2 56 3.45 58 23 0 62 0.00 62 24 3 59 4.84 62 25 0 63 0.00 63 26 1 54 1.82 55 27 0 63 0.00 63 28 0 56 0.00 56 29 0 57 0.00 57 30 2 66 2.94 68 31 3 61 4.69 64 32 0 60 0.00 60 33 1 60 1.64 61 34 0 53 0.00 53 35 0 68 0.00 68 36 1 60 1.64 61 37 0 54 0.00 54 38 1 53 1.85 54 39 2 60 3.23 62 40 1 54 1.82 55 41 0 55 0.00 55 42 1 42 2.33 43 43 2 56 3.45 58 44 0 58 0.00 58 45 1 54 1.82 55 46 0 72 0.00 72 47 0 50 0.00 50 48 0 55 0.00 55 49 1 50 1.96 51 50 1 59 1.67 60 51 0 55 0.00 55 52 1 45 2.17 46 53 0 73 0.00 73 54 0 41 0.00 41 55 1 61 1.61 62 56 1 50 1.96 51 57 2 44 4.35 46 58 3 59 4.84 62 59 2 48 4.00 50 60 0 58 0.00 58 61 0 54 0.00 54 62 0 37 0.00 37 63 0 62 0.00 62 64 1 51 1.92 52 65 0 56 0.00 56 66 2 51 3.77 53 67 0 53 0.00 53 68 0 50 0.00 50 69 0 40 0.00 40 70 2 55 3.51 57 71 2 53 3.64 55 72 2 49 3.92 51 73 0 60 0.00 60 74 1 42 2.33 43 75 1 50 1.96 51 76 2 37 5.13 39 77 0 45 0.00 45 78 2 55 3.51 57 79 0 43 0.00 43 80 0 39 0.00 39 81 1 55 1.79 56 82 0 45 0.00 45 83 1 57 1.72 58 84 0 48 0.00 48 85 0 56 0.00 56 86 0 42 0.00 42 87 3 54 5.26 57 88 0 48 0.00 48 89 1 36 2.70 37 90 2 55 3.51 57 91 2 34 5.56 36 92 0 48 0.00 48 93 1 41 2.38 42 94 0 41 0.00 41 95 0 42 0.00 42 96 0 39 0.00 39 97 3 36 7.69 39 98 0 43 0.00 43 99 0 31 0.00 31 100 0 45 0.00 45 101 1 44 2.22 45 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 19 49 27.94 68 2 20 40 33.33 60 3 11 53 17.19 64 4 8 40 16.67 48 5 8 49 14.04 57 6 6 42 12.50 48 7 4 45 8.16 49 8 1 47 2.08 48 9 1 53 1.85 54 10 1 55 1.79 56 11 2 57 3.39 59 12 2 43 4.44 45 13 1 59 1.67 60 14 1 45 2.17 46 15 2 49 3.92 51 16 0 49 0.00 49 17 1 45 2.17 46 18 0 64 0.00 64 19 0 52 0.00 52 20 0 71 0.00 71 21 1 50 1.96 51 22 2 61 3.17 63 23 0 57 0.00 57 24 3 51 5.56 54 25 1 44 2.22 45 26 3 59 4.84 62 27 0 57 0.00 57 28 2 64 3.03 66 29 2 50 3.85 52 30 1 47 2.08 48 31 1 53 1.85 54 32 1 56 1.75 57 33 1 56 1.75 57 34 1 63 1.56 64 35 2 51 3.77 53 36 2 48 4.00 50 37 1 68 1.45 69 38 5 66 7.04 71 39 0 46 0.00 46 40 3 56 5.08 59 41 1 36 2.70 37 42 1 66 1.49 67 43 1 52 1.89 53 44 1 60 1.64 61 45 3 67 4.29 70 46 5 51 8.93 56 47 1 57 1.72 58 48 3 42 6.67 45 49 0 57 0.00 57 50 2 60 3.23 62 51 1 60 1.64 61 52 1 64 1.54 65 53 2 43 4.44 45 54 3 55 5.17 58 55 1 62 1.59 63 56 0 58 0.00 58 57 2 50 3.85 52 58 2 42 4.55 44 59 1 51 1.92 52 60 6 39 13.33 45 61 0 48 0.00 48 62 1 47 2.08 48 63 2 64 3.03 66 64 2 63 3.08 65 65 1 51 1.92 52 66 0 40 0.00 40 67 1 59 1.67 60 68 1 62 1.59 63 69 1 55 1.79 56 70 1 57 1.72 58 71 1 45 2.17 46 72 1 61 1.61 62 73 1 57 1.72 58 74 1 43 2.27 44 75 2 55 3.51 57 76 2 37 5.13 39 77 1 52 1.89 53 78 1 51 1.92 52 79 0 51 0.00 51 80 2 55 3.51 57 81 0 46 0.00 46 82 1 55 1.79 56 83 2 53 3.64 55 84 1 42 2.33 43 85 1 40 2.44 41 86 2 49 3.92 51 87 2 47 4.08 49 88 1 31 3.12 32 89 1 51 1.92 52 90 1 42 2.33 43 91 0 40 0.00 40 92 4 54 6.90 58 93 1 63 1.56 64 94 0 30 0.00 30 95 1 38 2.56 39 96 2 39 4.88 41 97 0 31 0.00 31 98 0 43 0.00 43 99 0 27 0.00 27 100 2 26 7.14 28 101 3 39 7.14 42 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 20 35 36.36 55 2 10 32 23.81 42 3 6 38 13.64 44 4 5 44 10.20 49 5 4 49 7.55 53 6 10 46 17.86 56 7 4 65 5.80 69 8 0 79 0.00 79 9 1 78 1.27 79 10 3 57 5.00 60 11 3 65 4.41 68 12 0 60 0.00 60 13 1 64 1.54 65 14 0 61 0.00 61 15 3 69 4.17 72 16 3 72 4.00 75 17 3 72 4.00 75 18 1 79 1.25 80 19 1 78 1.27 79 20 0 68 0.00 68 21 2 70 2.78 72 22 3 73 3.95 76 23 1 81 1.22 82 24 0 72 0.00 72 25 0 68 0.00 68 26 2 85 2.30 87 27 0 90 0.00 90 28 0 90 0.00 90 29 1 75 1.32 76 30 0 90 0.00 90 31 2 80 2.44 82 32 1 82 1.20 83 33 1 79 1.25 80 34 3 89 3.26 92 35 1 84 1.18 85 36 1 89 1.11 90 37 1 77 1.28 78 38 0 68 0.00 68 39 4 72 5.26 76 40 0 82 0.00 82 41 2 88 2.22 90 42 0 79 0.00 79 43 3 88 3.30 91 44 0 92 0.00 92 45 3 99 2.94 102 46 1 78 1.27 79 47 2 84 2.33 86 48 2 106 1.85 108 49 2 68 2.86 70 50 2 76 2.56 78 51 1 76 1.30 77 52 0 79 0.00 79 53 0 67 0.00 67 54 0 77 0.00 77 55 0 69 0.00 69 56 1 96 1.03 97 57 1 73 1.35 74 58 1 77 1.28 78 59 0 85 0.00 85 60 3 69 4.17 72 61 2 80 2.44 82 62 0 85 0.00 85 63 0 73 0.00 73 64 2 75 2.60 77 65 3 62 4.62 65 66 0 76 0.00 76 67 1 76 1.30 77 68 2 79 2.47 81 69 1 71 1.39 72 70 1 67 1.47 68 71 1 76 1.30 77 72 0 80 0.00 80 73 1 72 1.37 73 74 2 61 3.17 63 75 2 76 2.56 78 76 1 72 1.37 73 77 1 76 1.30 77 78 0 57 0.00 57 79 0 73 0.00 73 80 1 67 1.47 68 81 0 61 0.00 61 82 0 68 0.00 68 83 1 56 1.75 57 84 0 54 0.00 54 85 0 80 0.00 80 86 1 68 1.45 69 87 2 62 3.12 64 88 0 80 0.00 80 89 1 61 1.61 62 90 0 66 0.00 66 91 1 66 1.49 67 92 1 50 1.96 51 93 2 51 3.77 53 94 2 51 3.77 53 95 1 64 1.54 65 96 1 51 1.92 52 97 3 61 4.69 64 98 0 55 0.00 55 99 0 36 0.00 36 100 1 31 3.12 32 101 2 51 3.77 53 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 33 13.16 38 2 7 34 17.07 41 3 9 38 19.15 47 4 5 50 9.09 55 5 0 52 0.00 52 6 0 48 0.00 48 7 1 28 3.45 29 8 1 37 2.63 38 9 2 44 4.35 46 10 0 27 0.00 27 11 0 26 0.00 26 12 0 33 0.00 33 13 1 38 2.56 39 14 1 32 3.03 33 15 0 31 0.00 31 16 0 36 0.00 36 17 0 34 0.00 34 18 0 32 0.00 32 19 0 37 0.00 37 20 0 22 0.00 22 21 1 28 3.45 29 22 0 32 0.00 32 23 0 29 0.00 29 24 0 35 0.00 35 25 0 34 0.00 34 26 0 35 0.00 35 27 0 30 0.00 30 28 1 33 2.94 34 29 1 25 3.85 26 30 0 38 0.00 38 31 0 26 0.00 26 32 1 31 3.12 32 33 0 26 0.00 26 34 0 22 0.00 22 35 0 22 0.00 22 36 0 33 0.00 33 37 0 25 0.00 25 38 0 26 0.00 26 39 0 16 0.00 16 40 1 28 3.45 29 41 1 20 4.76 21 42 0 21 0.00 21 43 0 15 0.00 15 44 0 26 0.00 26 45 0 25 0.00 25 46 1 20 4.76 21 47 1 24 4.00 25 48 0 23 0.00 23 49 0 25 0.00 25 50 0 20 0.00 20 51 0 26 0.00 26 52 0 17 0.00 17 53 0 19 0.00 19 54 0 20 0.00 20 55 0 21 0.00 21 56 0 23 0.00 23 57 0 13 0.00 13 58 0 15 0.00 15 59 0 16 0.00 16 60 0 14 0.00 14 61 1 22 4.35 23 62 1 20 4.76 21 63 0 21 0.00 21 64 0 14 0.00 14 65 0 15 0.00 15 66 0 20 0.00 20 67 0 14 0.00 14 68 1 19 5.00 20 69 0 21 0.00 21 70 1 11 8.33 12 71 0 20 0.00 20 72 1 10 9.09 11 73 0 9 0.00 9 74 0 17 0.00 17 75 0 22 0.00 22 76 0 18 0.00 18 77 1 15 6.25 16 78 0 17 0.00 17 79 1 12 7.69 13 80 0 17 0.00 17 81 0 14 0.00 14 82 0 16 0.00 16 83 0 5 0.00 5 84 0 17 0.00 17 85 0 13 0.00 13 86 0 12 0.00 12 87 0 15 0.00 15 88 0 8 0.00 8 89 0 13 0.00 13 90 0 14 0.00 14 91 0 12 0.00 12 92 0 7 0.00 7 93 0 7 0.00 7 94 0 7 0.00 7 95 1 16 5.88 17 96 0 13 0.00 13 97 0 10 0.00 10 98 0 12 0.00 12 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 18 14.29 21 2 4 23 14.81 27 3 7 34 17.07 41 4 13 34 27.66 47 5 0 54 0.00 54 6 1 60 1.64 61 7 3 40 6.98 43 8 0 40 0.00 40 9 1 45 2.17 46 10 0 40 0.00 40 11 0 34 0.00 34 12 1 41 2.38 42 13 0 33 0.00 33 14 0 53 0.00 53 15 1 36 2.70 37 16 0 35 0.00 35 17 0 32 0.00 32 18 2 30 6.25 32 19 2 29 6.45 31 20 0 40 0.00 40 21 0 22 0.00 22 22 0 31 0.00 31 23 0 35 0.00 35 24 1 30 3.23 31 25 3 25 10.71 28 26 1 30 3.23 31 27 1 30 3.23 31 28 0 31 0.00 31 29 2 31 6.06 33 30 1 26 3.70 27 31 0 29 0.00 29 32 0 23 0.00 23 33 1 23 4.17 24 34 0 25 0.00 25 35 0 24 0.00 24 36 1 30 3.23 31 37 0 16 0.00 16 38 1 29 3.33 30 39 0 17 0.00 17 40 1 27 3.57 28 41 1 33 2.94 34 42 0 22 0.00 22 43 0 18 0.00 18 44 0 18 0.00 18 45 0 19 0.00 19 46 1 20 4.76 21 47 0 29 0.00 29 48 1 20 4.76 21 49 1 18 5.26 19 50 0 27 0.00 27 51 0 26 0.00 26 52 1 29 3.33 30 53 0 15 0.00 15 54 2 13 13.33 15 55 1 18 5.26 19 56 1 24 4.00 25 57 2 26 7.14 28 58 0 18 0.00 18 59 0 19 0.00 19 60 0 14 0.00 14 61 0 22 0.00 22 62 0 25 0.00 25 63 0 20 0.00 20 64 0 9 0.00 9 65 0 18 0.00 18 66 0 18 0.00 18 67 0 18 0.00 18 68 1 18 5.26 19 69 1 20 4.76 21 70 0 25 0.00 25 71 0 19 0.00 19 72 1 21 4.55 22 73 1 17 5.56 18 74 0 15 0.00 15 75 0 20 0.00 20 76 0 14 0.00 14 77 0 17 0.00 17 78 0 13 0.00 13 79 0 4 0.00 4 80 0 17 0.00 17 81 0 15 0.00 15 82 0 13 0.00 13 83 1 12 7.69 13 84 0 14 0.00 14 85 1 15 6.25 16 86 0 13 0.00 13 87 0 11 0.00 11 88 0 13 0.00 13 89 0 7 0.00 7 90 1 20 4.76 21 91 0 11 0.00 11 92 0 8 0.00 8 93 0 11 0.00 11 94 0 9 0.00 9 95 0 12 0.00 12 96 0 13 0.00 13 97 0 11 0.00 11 98 1 10 9.09 11 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 20 13.04 23 2 2 18 10.00 20 3 3 9 25.00 12 4 5 12 29.41 17 5 1 27 3.57 28 6 1 32 3.03 33 7 1 49 2.00 50 8 3 60 4.76 63 9 0 50 0.00 50 10 3 58 4.92 61 11 0 66 0.00 66 12 2 51 3.77 53 13 0 49 0.00 49 14 1 43 2.27 44 15 0 67 0.00 67 16 2 56 3.45 58 17 1 52 1.89 53 18 2 45 4.26 47 19 0 45 0.00 45 20 1 39 2.50 40 21 0 45 0.00 45 22 0 35 0.00 35 23 0 42 0.00 42 24 0 41 0.00 41 25 0 43 0.00 43 26 1 39 2.50 40 27 1 46 2.13 47 28 0 42 0.00 42 29 2 38 5.00 40 30 0 37 0.00 37 31 0 37 0.00 37 32 1 31 3.12 32 33 0 54 0.00 54 34 1 43 2.27 44 35 0 39 0.00 39 36 0 45 0.00 45 37 0 37 0.00 37 38 1 44 2.22 45 39 1 37 2.63 38 40 1 33 2.94 34 41 0 34 0.00 34 42 0 34 0.00 34 43 1 34 2.86 35 44 2 40 4.76 42 45 0 48 0.00 48 46 1 29 3.33 30 47 0 35 0.00 35 48 2 38 5.00 40 49 1 33 2.94 34 50 1 38 2.56 39 51 1 29 3.33 30 52 0 37 0.00 37 53 4 35 10.26 39 54 0 33 0.00 33 55 1 23 4.17 24 56 1 33 2.94 34 57 0 40 0.00 40 58 0 34 0.00 34 59 0 34 0.00 34 60 0 33 0.00 33 61 0 31 0.00 31 62 0 24 0.00 24 63 1 41 2.38 42 64 1 30 3.23 31 65 0 27 0.00 27 66 0 26 0.00 26 67 0 14 0.00 14 68 1 26 3.70 27 69 0 25 0.00 25 70 0 23 0.00 23 71 0 28 0.00 28 72 0 22 0.00 22 73 0 26 0.00 26 74 2 24 7.69 26 75 1 26 3.70 27 76 0 21 0.00 21 77 0 27 0.00 27 78 0 26 0.00 26 79 0 22 0.00 22 80 0 15 0.00 15 81 0 25 0.00 25 82 0 26 0.00 26 83 0 14 0.00 14 84 0 29 0.00 29 85 0 11 0.00 11 86 0 14 0.00 14 87 0 19 0.00 19 88 0 20 0.00 20 89 0 10 0.00 10 90 0 20 0.00 20 91 1 19 5.00 20 92 0 25 0.00 25 93 0 16 0.00 16 94 0 17 0.00 17 95 0 18 0.00 18 96 1 14 6.67 15 97 0 17 0.00 17 98 1 11 8.33 12