/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
781
Pairs without alignments under any condition
99219
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
36053
Methylated C's in CpG context
189
Methylated C's in CHG context
367
Methylated C's in CHH context
300
Methylated C's in Unknown context
5
Unmethylated C's in CpG context
10550
Unmethylated C's in CHG context
10313
Unmethylated C's in CHH context
14334
Unmethylated C's in Unknown context
13
Percentage methylation (CpG context)
1.8%
Percentage methylation (CHG context)
3.4%
Percentage methylation (CHH context)
2.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
497
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
284
original bottom strand
Deduplication
Alignments analysed
781
Unique alignments
778
Duplicates removed
3
Duplicated alignments were found at 3 different positions
