CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 54 1.82 55 2 0 74 0.00 74 3 0 65 0.00 65 4 0 32 0.00 32 5 0 40 0.00 40 6 0 23 0.00 23 7 0 37 0.00 37 8 0 29 0.00 29 9 0 41 0.00 41 10 0 34 0.00 34 11 0 30 0.00 30 12 0 32 0.00 32 13 1 33 2.94 34 14 0 39 0.00 39 15 1 27 3.57 28 16 0 37 0.00 37 17 0 42 0.00 42 18 0 34 0.00 34 19 0 31 0.00 31 20 0 32 0.00 32 21 0 34 0.00 34 22 0 28 0.00 28 23 0 32 0.00 32 24 0 30 0.00 30 25 0 25 0.00 25 26 0 35 0.00 35 27 1 31 3.12 32 28 0 42 0.00 42 29 0 43 0.00 43 30 0 28 0.00 28 31 0 36 0.00 36 32 1 37 2.63 38 33 0 27 0.00 27 34 0 29 0.00 29 35 0 34 0.00 34 36 0 34 0.00 34 37 0 35 0.00 35 38 0 44 0.00 44 39 0 26 0.00 26 40 0 35 0.00 35 41 0 34 0.00 34 42 0 41 0.00 41 43 0 39 0.00 39 44 2 22 8.33 24 45 1 35 2.78 36 46 0 30 0.00 30 47 0 29 0.00 29 48 0 32 0.00 32 49 0 39 0.00 39 50 0 37 0.00 37 51 0 39 0.00 39 52 1 30 3.23 31 53 0 32 0.00 32 54 0 32 0.00 32 55 0 34 0.00 34 56 0 22 0.00 22 57 0 34 0.00 34 58 2 41 4.65 43 59 2 46 4.17 48 60 1 38 2.56 39 61 0 34 0.00 34 62 0 29 0.00 29 63 1 27 3.57 28 64 1 19 5.00 20 65 0 28 0.00 28 66 2 25 7.41 27 67 0 37 0.00 37 68 1 33 2.94 34 69 0 25 0.00 25 70 0 25 0.00 25 71 0 24 0.00 24 72 0 23 0.00 23 73 1 26 3.70 27 74 0 30 0.00 30 75 0 25 0.00 25 76 0 32 0.00 32 77 0 15 0.00 15 78 1 24 4.00 25 79 0 20 0.00 20 80 1 21 4.55 22 81 2 36 5.26 38 82 0 28 0.00 28 83 0 21 0.00 21 84 1 16 5.88 17 85 0 24 0.00 24 86 1 18 5.26 19 87 1 21 4.55 22 88 0 17 0.00 17 89 1 19 5.00 20 90 2 13 13.33 15 91 0 15 0.00 15 92 1 16 5.88 17 93 0 23 0.00 23 94 2 14 12.50 16 95 2 20 9.09 22 96 0 12 0.00 12 97 0 13 0.00 13 98 0 13 0.00 13 99 0 17 0.00 17 100 0 29 0.00 29 101 0 15 0.00 15 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 35 19 64.81 54 2 22 16 57.89 38 3 11 25 30.56 36 4 2 28 6.67 30 5 0 30 0.00 30 6 3 12 20.00 15 7 0 40 0.00 40 8 1 24 4.00 25 9 0 38 0.00 38 10 0 27 0.00 27 11 1 30 3.23 31 12 0 32 0.00 32 13 1 25 3.85 26 14 0 33 0.00 33 15 1 25 3.85 26 16 1 42 2.33 43 17 0 32 0.00 32 18 0 29 0.00 29 19 1 16 5.88 17 20 1 40 2.44 41 21 0 34 0.00 34 22 0 31 0.00 31 23 0 33 0.00 33 24 0 27 0.00 27 25 0 31 0.00 31 26 0 35 0.00 35 27 0 50 0.00 50 28 0 34 0.00 34 29 0 35 0.00 35 30 2 32 5.88 34 31 2 37 5.13 39 32 0 37 0.00 37 33 0 40 0.00 40 34 0 32 0.00 32 35 2 36 5.26 38 36 0 45 0.00 45 37 0 47 0.00 47 38 1 35 2.78 36 39 0 34 0.00 34 40 0 39 0.00 39 41 0 35 0.00 35 42 0 39 0.00 39 43 0 25 0.00 25 44 0 47 0.00 47 45 0 41 0.00 41 46 1 26 3.70 27 47 3 29 9.38 32 48 0 34 0.00 34 49 0 18 0.00 18 50 1 27 3.57 28 51 0 27 0.00 27 52 0 27 0.00 27 53 1 34 2.86 35 54 1 32 3.03 33 55 0 30 0.00 30 56 1 31 3.12 32 57 1 21 4.55 22 58 1 39 2.50 40 59 0 29 0.00 29 60 2 27 6.90 29 61 0 28 0.00 28 62 0 28 0.00 28 63 0 26 0.00 26 64 0 39 0.00 39 65 0 21 0.00 21 66 0 22 0.00 22 67 0 30 0.00 30 68 0 22 0.00 22 69 0 27 0.00 27 70 0 38 0.00 38 71 1 26 3.70 27 72 0 27 0.00 27 73 0 35 0.00 35 74 0 25 0.00 25 75 1 27 3.57 28 76 0 24 0.00 24 77 2 33 5.71 35 78 0 26 0.00 26 79 1 23 4.17 24 80 2 23 8.00 25 81 0 30 0.00 30 82 1 19 5.00 20 83 1 24 4.00 25 84 0 29 0.00 29 85 0 16 0.00 16 86 0 12 0.00 12 87 0 22 0.00 22 88 1 16 5.88 17 89 0 26 0.00 26 90 2 20 9.09 22 91 1 17 5.56 18 92 3 23 11.54 26 93 0 11 0.00 11 94 0 26 0.00 26 95 0 19 0.00 19 96 0 17 0.00 17 97 1 10 9.09 11 98 1 13 7.14 14 99 0 11 0.00 11 100 0 13 0.00 13 101 0 13 0.00 13 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11 13 45.83 24 2 1 15 6.25 16 3 2 35 5.41 37 4 2 26 7.14 28 5 1 42 2.33 43 6 0 40 0.00 40 7 0 49 0.00 49 8 0 42 0.00 42 9 0 43 0.00 43 10 0 41 0.00 41 11 0 43 0.00 43 12 0 48 0.00 48 13 1 57 1.72 58 14 0 58 0.00 58 15 0 58 0.00 58 16 1 50 1.96 51 17 0 43 0.00 43 18 1 55 1.79 56 19 1 60 1.64 61 20 0 50 0.00 50 21 0 46 0.00 46 22 0 49 0.00 49 23 2 60 3.23 62 24 0 63 0.00 63 25 0 55 0.00 55 26 0 64 0.00 64 27 1 42 2.33 43 28 1 60 1.64 61 29 0 60 0.00 60 30 1 54 1.82 55 31 0 54 0.00 54 32 0 69 0.00 69 33 0 62 0.00 62 34 0 64 0.00 64 35 0 60 0.00 60 36 0 58 0.00 58 37 0 47 0.00 47 38 0 51 0.00 51 39 0 51 0.00 51 40 0 52 0.00 52 41 0 61 0.00 61 42 0 49 0.00 49 43 0 52 0.00 52 44 0 56 0.00 56 45 0 69 0.00 69 46 0 72 0.00 72 47 1 62 1.59 63 48 0 72 0.00 72 49 1 50 1.96 51 50 0 62 0.00 62 51 0 56 0.00 56 52 2 49 3.92 51 53 1 57 1.72 58 54 0 53 0.00 53 55 1 55 1.79 56 56 0 49 0.00 49 57 1 61 1.61 62 58 0 46 0.00 46 59 1 39 2.50 40 60 0 39 0.00 39 61 0 41 0.00 41 62 0 42 0.00 42 63 1 48 2.04 49 64 0 31 0.00 31 65 1 44 2.22 45 66 0 51 0.00 51 67 0 39 0.00 39 68 0 47 0.00 47 69 0 55 0.00 55 70 0 40 0.00 40 71 2 37 5.13 39 72 0 41 0.00 41 73 0 35 0.00 35 74 0 34 0.00 34 75 0 40 0.00 40 76 1 42 2.33 43 77 0 34 0.00 34 78 2 48 4.00 50 79 0 40 0.00 40 80 0 42 0.00 42 81 0 27 0.00 27 82 1 28 3.45 29 83 0 33 0.00 33 84 0 33 0.00 33 85 0 30 0.00 30 86 0 31 0.00 31 87 0 27 0.00 27 88 0 41 0.00 41 89 0 27 0.00 27 90 0 34 0.00 34 91 0 34 0.00 34 92 0 23 0.00 23 93 1 28 3.45 29 94 0 24 0.00 24 95 0 25 0.00 25 96 0 19 0.00 19 97 0 37 0.00 37 98 0 21 0.00 21 99 0 15 0.00 15 100 0 20 0.00 20 101 0 25 0.00 25 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3 16 15.79 19 2 5 23 17.86 28 3 5 20 20.00 25 4 2 13 13.33 15 5 0 32 0.00 32 6 0 14 0.00 14 7 0 11 0.00 11 8 0 18 0.00 18 9 0 19 0.00 19 10 0 17 0.00 17 11 0 19 0.00 19 12 0 9 0.00 9 13 0 12 0.00 12 14 1 10 9.09 11 15 1 17 5.56 18 16 0 12 0.00 12 17 0 14 0.00 14 18 0 12 0.00 12 19 0 10 0.00 10 20 0 13 0.00 13 21 0 15 0.00 15 22 0 10 0.00 10 23 0 12 0.00 12 24 0 14 0.00 14 25 0 18 0.00 18 26 1 12 7.69 13 27 0 8 0.00 8 28 0 10 0.00 10 29 0 5 0.00 5 30 0 12 0.00 12 31 1 17 5.56 18 32 0 11 0.00 11 33 0 9 0.00 9 34 0 9 0.00 9 35 0 11 0.00 11 36 0 5 0.00 5 37 0 7 0.00 7 38 0 6 0.00 6 39 0 6 0.00 6 40 0 8 0.00 8 41 0 2 0.00 2 42 0 8 0.00 8 43 0 10 0.00 10 44 1 9 10.00 10 45 0 5 0.00 5 46 0 5 0.00 5 47 0 10 0.00 10 48 0 11 0.00 11 49 1 9 10.00 10 50 0 1 0.00 1 51 0 5 0.00 5 52 0 3 0.00 3 53 0 6 0.00 6 54 0 4 0.00 4 55 0 2 0.00 2 56 0 7 0.00 7 57 0 3 0.00 3 58 0 4 0.00 4 59 0 8 0.00 8 60 0 5 0.00 5 61 0 4 0.00 4 62 0 4 0.00 4 63 0 5 0.00 5 64 0 7 0.00 7 65 0 2 0.00 2 66 0 7 0.00 7 67 0 3 0.00 3 68 0 7 0.00 7 69 0 4 0.00 4 70 0 3 0.00 3 71 0 4 0.00 4 72 0 5 0.00 5 73 0 4 0.00 4 74 0 3 0.00 3 75 0 8 0.00 8 76 0 8 0.00 8 77 0 6 0.00 6 78 0 6 0.00 6 79 0 4 0.00 4 80 0 4 0.00 4 81 0 1 0.00 1 82 0 2 0.00 2 83 0 3 0.00 3 84 0 1 0.00 1 85 0 2 0.00 2 86 0 3 0.00 3 87 0 6 0.00 6 88 0 0 0 89 0 4 0.00 4 90 0 2 0.00 2 91 0 1 0.00 1 92 0 1 0.00 1 93 0 5 0.00 5 94 0 0 0 95 0 3 0.00 3 96 0 5 0.00 5 97 0 3 0.00 3 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 0 8 0.00 8 2 3 13 18.75 16 3 2 24 7.69 26 4 1 10 9.09 11 5 0 18 0.00 18 6 1 24 4.00 25 7 0 14 0.00 14 8 0 19 0.00 19 9 0 15 0.00 15 10 0 17 0.00 17 11 0 10 0.00 10 12 0 19 0.00 19 13 0 13 0.00 13 14 0 16 0.00 16 15 0 13 0.00 13 16 0 12 0.00 12 17 0 13 0.00 13 18 1 8 11.11 9 19 0 13 0.00 13 20 0 11 0.00 11 21 0 11 0.00 11 22 0 10 0.00 10 23 0 11 0.00 11 24 0 11 0.00 11 25 0 6 0.00 6 26 0 9 0.00 9 27 0 8 0.00 8 28 0 14 0.00 14 29 0 16 0.00 16 30 0 13 0.00 13 31 2 7 22.22 9 32 0 7 0.00 7 33 0 6 0.00 6 34 0 10 0.00 10 35 0 7 0.00 7 36 0 12 0.00 12 37 0 7 0.00 7 38 1 9 10.00 10 39 0 6 0.00 6 40 0 11 0.00 11 41 0 11 0.00 11 42 0 4 0.00 4 43 0 10 0.00 10 44 0 13 0.00 13 45 0 8 0.00 8 46 0 6 0.00 6 47 0 5 0.00 5 48 0 9 0.00 9 49 0 9 0.00 9 50 0 10 0.00 10 51 0 9 0.00 9 52 0 5 0.00 5 53 0 7 0.00 7 54 0 10 0.00 10 55 1 5 16.67 6 56 0 8 0.00 8 57 1 8 11.11 9 58 0 6 0.00 6 59 0 8 0.00 8 60 0 7 0.00 7 61 0 4 0.00 4 62 0 5 0.00 5 63 0 5 0.00 5 64 0 5 0.00 5 65 0 3 0.00 3 66 0 7 0.00 7 67 0 4 0.00 4 68 0 5 0.00 5 69 0 8 0.00 8 70 0 2 0.00 2 71 0 7 0.00 7 72 0 5 0.00 5 73 0 7 0.00 7 74 0 2 0.00 2 75 0 5 0.00 5 76 0 4 0.00 4 77 0 4 0.00 4 78 0 2 0.00 2 79 0 2 0.00 2 80 0 7 0.00 7 81 0 3 0.00 3 82 0 0 0 83 0 3 0.00 3 84 0 1 0.00 1 85 0 4 0.00 4 86 0 7 0.00 7 87 0 5 0.00 5 88 0 3 0.00 3 89 0 1 0.00 1 90 0 2 0.00 2 91 0 1 0.00 1 92 0 2 0.00 2 93 0 2 0.00 2 94 0 1 0.00 1 95 0 3 0.00 3 96 0 1 0.00 1 97 0 4 0.00 4 98 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 4 33.33 6 2 3 7 30.00 10 3 0 8 0.00 8 4 2 8 20.00 10 5 0 8 0.00 8 6 0 19 0.00 19 7 0 18 0.00 18 8 0 22 0.00 22 9 0 27 0.00 27 10 0 34 0.00 34 11 0 30 0.00 30 12 0 21 0.00 21 13 0 35 0.00 35 14 0 26 0.00 26 15 0 27 0.00 27 16 0 18 0.00 18 17 1 25 3.85 26 18 0 24 0.00 24 19 0 23 0.00 23 20 0 21 0.00 21 21 0 17 0.00 17 22 0 25 0.00 25 23 0 14 0.00 14 24 0 13 0.00 13 25 1 10 9.09 11 26 1 13 7.14 14 27 0 15 0.00 15 28 0 23 0.00 23 29 0 16 0.00 16 30 0 8 0.00 8 31 0 16 0.00 16 32 0 14 0.00 14 33 0 27 0.00 27 34 0 16 0.00 16 35 1 19 5.00 20 36 0 21 0.00 21 37 0 19 0.00 19 38 0 23 0.00 23 39 0 20 0.00 20 40 1 18 5.26 19 41 1 17 5.56 18 42 0 10 0.00 10 43 0 11 0.00 11 44 0 10 0.00 10 45 0 19 0.00 19 46 0 17 0.00 17 47 0 14 0.00 14 48 0 12 0.00 12 49 0 13 0.00 13 50 1 15 6.25 16 51 0 9 0.00 9 52 0 10 0.00 10 53 0 12 0.00 12 54 0 7 0.00 7 55 0 13 0.00 13 56 0 8 0.00 8 57 1 13 7.14 14 58 0 13 0.00 13 59 0 4 0.00 4 60 2 11 15.38 13 61 0 11 0.00 11 62 0 6 0.00 6 63 0 12 0.00 12 64 0 7 0.00 7 65 0 4 0.00 4 66 0 7 0.00 7 67 0 4 0.00 4 68 0 12 0.00 12 69 0 4 0.00 4 70 0 17 0.00 17 71 0 6 0.00 6 72 0 9 0.00 9 73 1 6 14.29 7 74 0 6 0.00 6 75 0 8 0.00 8 76 0 4 0.00 4 77 0 5 0.00 5 78 0 6 0.00 6 79 0 14 0.00 14 80 0 8 0.00 8 81 0 5 0.00 5 82 0 10 0.00 10 83 0 7 0.00 7 84 0 9 0.00 9 85 0 7 0.00 7 86 0 5 0.00 5 87 0 5 0.00 5 88 0 4 0.00 4 89 0 4 0.00 4 90 0 6 0.00 6 91 0 8 0.00 8 92 0 7 0.00 7 93 0 7 0.00 7 94 0 4 0.00 4 95 0 6 0.00 6 96 0 7 0.00 7 97 0 4 0.00 4 98 0 10 0.00 10