/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
587
Pairs without alignments under any condition
99413
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
22950
Methylated C's in CpG context
98
Methylated C's in CHG context
237
Methylated C's in CHH context
100
Methylated C's in Unknown context
5
Unmethylated C's in CpG context
6548
Unmethylated C's in CHG context
6286
Unmethylated C's in CHH context
9681
Unmethylated C's in Unknown context
4
Percentage methylation (CpG context)
1.5%
Percentage methylation (CHG context)
3.6%
Percentage methylation (CHH context)
1.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
370
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
217
original bottom strand
Deduplication
Alignments analysed
587
Unique alignments
533
Duplicates removed
54
Duplicated alignments were found at 38 different positions
