/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
1825
Pairs without alignments under any condition
98175
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
67790
Methylated C's in CpG context
214
Methylated C's in CHG context
788
Methylated C's in CHH context
347
Methylated C's in Unknown context
8
Unmethylated C's in CpG context
19193
Unmethylated C's in CHG context
18392
Unmethylated C's in CHH context
28856
Unmethylated C's in Unknown context
24
Percentage methylation (CpG context)
1.1%
Percentage methylation (CHG context)
4.1%
Percentage methylation (CHH context)
1.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
1215
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
610
original bottom strand
Deduplication
Alignments analysed
1825
Unique alignments
1540
Duplicates removed
285
Duplicated alignments were found at 159 different positions
