CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1 53 1.85 54 2 0 67 0.00 67 3 4 47 7.84 51 4 0 32 0.00 32 5 1 36 2.70 37 6 0 21 0.00 21 7 0 26 0.00 26 8 0 16 0.00 16 9 0 27 0.00 27 10 0 31 0.00 31 11 0 26 0.00 26 12 0 31 0.00 31 13 0 19 0.00 19 14 0 20 0.00 20 15 0 29 0.00 29 16 0 26 0.00 26 17 0 30 0.00 30 18 0 37 0.00 37 19 0 26 0.00 26 20 0 28 0.00 28 21 0 33 0.00 33 22 0 30 0.00 30 23 0 37 0.00 37 24 0 25 0.00 25 25 0 29 0.00 29 26 1 21 4.55 22 27 0 30 0.00 30 28 0 27 0.00 27 29 0 24 0.00 24 30 0 29 0.00 29 31 1 37 2.63 38 32 0 22 0.00 22 33 0 29 0.00 29 34 0 25 0.00 25 35 0 20 0.00 20 36 0 31 0.00 31 37 0 24 0.00 24 38 1 25 3.85 26 39 0 32 0.00 32 40 0 29 0.00 29 41 0 19 0.00 19 42 0 23 0.00 23 43 1 27 3.57 28 44 0 27 0.00 27 45 0 26 0.00 26 46 0 23 0.00 23 47 0 37 0.00 37 48 1 23 4.17 24 49 0 24 0.00 24 50 0 40 0.00 40 51 0 24 0.00 24 52 0 34 0.00 34 53 1 29 3.33 30 54 0 30 0.00 30 55 0 33 0.00 33 56 0 19 0.00 19 57 1 21 4.55 22 58 0 32 0.00 32 59 0 36 0.00 36 60 0 32 0.00 32 61 0 32 0.00 32 62 1 27 3.57 28 63 0 17 0.00 17 64 0 31 0.00 31 65 0 22 0.00 22 66 0 26 0.00 26 67 0 28 0.00 28 68 0 12 0.00 12 69 0 28 0.00 28 70 0 21 0.00 21 71 0 23 0.00 23 72 0 32 0.00 32 73 0 16 0.00 16 74 1 30 3.23 31 75 1 26 3.70 27 76 0 23 0.00 23 77 0 19 0.00 19 78 1 22 4.35 23 79 0 19 0.00 19 80 1 15 6.25 16 81 1 29 3.33 30 82 1 16 5.88 17 83 0 25 0.00 25 84 0 30 0.00 30 85 0 25 0.00 25 86 0 16 0.00 16 87 1 32 3.03 33 88 0 28 0.00 28 89 0 19 0.00 19 90 1 14 6.67 15 91 0 16 0.00 16 92 0 13 0.00 13 93 1 20 4.76 21 94 0 21 0.00 21 95 0 12 0.00 12 96 0 9 0.00 9 97 0 22 0.00 22 98 1 15 6.25 16 99 0 15 0.00 15 100 0 19 0.00 19 101 0 22 0.00 22 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 27 21 56.25 48 2 14 19 42.42 33 3 9 12 42.86 21 4 5 24 17.24 29 5 2 27 6.90 29 6 1 22 4.35 23 7 0 29 0.00 29 8 1 31 3.12 32 9 1 20 4.76 21 10 0 22 0.00 22 11 1 33 2.94 34 12 0 10 0.00 10 13 0 25 0.00 25 14 0 22 0.00 22 15 0 29 0.00 29 16 2 26 7.14 28 17 0 26 0.00 26 18 0 25 0.00 25 19 0 31 0.00 31 20 1 26 3.70 27 21 0 20 0.00 20 22 0 24 0.00 24 23 0 27 0.00 27 24 0 24 0.00 24 25 0 35 0.00 35 26 2 29 6.45 31 27 0 32 0.00 32 28 1 29 3.33 30 29 0 35 0.00 35 30 0 34 0.00 34 31 0 24 0.00 24 32 0 18 0.00 18 33 1 30 3.23 31 34 1 17 5.56 18 35 0 42 0.00 42 36 0 43 0.00 43 37 0 27 0.00 27 38 0 34 0.00 34 39 0 23 0.00 23 40 1 23 4.17 24 41 1 37 2.63 38 42 0 26 0.00 26 43 2 30 6.25 32 44 3 29 9.38 32 45 0 23 0.00 23 46 0 32 0.00 32 47 1 24 4.00 25 48 3 32 8.57 35 49 0 25 0.00 25 50 0 15 0.00 15 51 0 24 0.00 24 52 0 26 0.00 26 53 0 21 0.00 21 54 0 40 0.00 40 55 0 30 0.00 30 56 0 30 0.00 30 57 1 29 3.33 30 58 0 23 0.00 23 59 0 22 0.00 22 60 1 19 5.00 20 61 0 31 0.00 31 62 0 28 0.00 28 63 0 27 0.00 27 64 1 28 3.45 29 65 1 28 3.45 29 66 0 23 0.00 23 67 0 26 0.00 26 68 0 23 0.00 23 69 0 26 0.00 26 70 2 29 6.45 31 71 0 21 0.00 21 72 0 20 0.00 20 73 0 18 0.00 18 74 1 24 4.00 25 75 0 29 0.00 29 76 1 16 5.88 17 77 0 20 0.00 20 78 0 20 0.00 20 79 0 19 0.00 19 80 0 20 0.00 20 81 0 21 0.00 21 82 0 19 0.00 19 83 0 25 0.00 25 84 2 17 10.53 19 85 1 16 5.88 17 86 0 18 0.00 18 87 0 22 0.00 22 88 0 11 0.00 11 89 0 18 0.00 18 90 1 12 7.69 13 91 1 21 4.55 22 92 0 13 0.00 13 93 2 13 13.33 15 94 0 18 0.00 18 95 1 20 4.76 21 96 0 16 0.00 16 97 1 12 7.69 13 98 1 14 6.67 15 99 1 3 25.00 4 100 0 10 0.00 10 101 0 16 0.00 16 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6 5 54.55 11 2 3 9 25.00 12 3 0 17 0.00 17 4 1 27 3.57 28 5 2 27 6.90 29 6 3 46 6.12 49 7 0 47 0.00 47 8 0 32 0.00 32 9 0 36 0.00 36 10 0 39 0.00 39 11 0 27 0.00 27 12 0 39 0.00 39 13 0 35 0.00 35 14 0 31 0.00 31 15 1 41 2.38 42 16 0 53 0.00 53 17 0 40 0.00 40 18 0 49 0.00 49 19 0 52 0.00 52 20 0 41 0.00 41 21 0 42 0.00 42 22 0 30 0.00 30 23 0 34 0.00 34 24 0 47 0.00 47 25 2 54 3.57 56 26 0 44 0.00 44 27 0 53 0.00 53 28 1 48 2.04 49 29 0 51 0.00 51 30 0 47 0.00 47 31 0 38 0.00 38 32 0 54 0.00 54 33 0 55 0.00 55 34 0 49 0.00 49 35 0 37 0.00 37 36 0 31 0.00 31 37 0 40 0.00 40 38 1 36 2.70 37 39 0 37 0.00 37 40 0 35 0.00 35 41 1 40 2.44 41 42 1 45 2.17 46 43 1 41 2.38 42 44 1 39 2.50 40 45 0 52 0.00 52 46 1 54 1.82 55 47 0 54 0.00 54 48 0 58 0.00 58 49 0 50 0.00 50 50 1 56 1.75 57 51 0 62 0.00 62 52 0 47 0.00 47 53 0 48 0.00 48 54 0 47 0.00 47 55 0 37 0.00 37 56 0 47 0.00 47 57 0 40 0.00 40 58 0 40 0.00 40 59 1 48 2.04 49 60 0 34 0.00 34 61 0 31 0.00 31 62 0 32 0.00 32 63 1 39 2.50 40 64 0 28 0.00 28 65 1 25 3.85 26 66 1 29 3.33 30 67 1 43 2.27 44 68 0 55 0.00 55 69 0 32 0.00 32 70 0 37 0.00 37 71 1 35 2.78 36 72 0 36 0.00 36 73 0 39 0.00 39 74 0 38 0.00 38 75 0 37 0.00 37 76 0 38 0.00 38 77 1 41 2.38 42 78 0 45 0.00 45 79 0 33 0.00 33 80 0 34 0.00 34 81 0 29 0.00 29 82 0 28 0.00 28 83 0 28 0.00 28 84 1 21 4.55 22 85 0 30 0.00 30 86 0 30 0.00 30 87 0 21 0.00 21 88 0 33 0.00 33 89 0 27 0.00 27 90 0 34 0.00 34 91 0 21 0.00 21 92 1 27 3.57 28 93 0 35 0.00 35 94 0 22 0.00 22 95 0 26 0.00 26 96 1 13 7.14 14 97 0 28 0.00 28 98 0 19 0.00 19 99 0 11 0.00 11 100 0 23 0.00 23 101 1 19 5.00 20 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4 11 26.67 15 2 7 17 29.17 24 3 1 16 5.88 17 4 1 13 7.14 14 5 0 29 0.00 29 6 0 14 0.00 14 7 0 13 0.00 13 8 0 15 0.00 15 9 0 20 0.00 20 10 0 18 0.00 18 11 0 16 0.00 16 12 0 15 0.00 15 13 0 8 0.00 8 14 0 9 0.00 9 15 0 14 0.00 14 16 0 12 0.00 12 17 0 12 0.00 12 18 0 20 0.00 20 19 0 15 0.00 15 20 0 13 0.00 13 21 0 19 0.00 19 22 0 5 0.00 5 23 0 20 0.00 20 24 0 7 0.00 7 25 0 11 0.00 11 26 0 12 0.00 12 27 1 12 7.69 13 28 0 9 0.00 9 29 0 6 0.00 6 30 0 9 0.00 9 31 0 12 0.00 12 32 0 14 0.00 14 33 0 4 0.00 4 34 0 8 0.00 8 35 0 12 0.00 12 36 1 7 12.50 8 37 0 13 0.00 13 38 0 11 0.00 11 39 0 14 0.00 14 40 0 10 0.00 10 41 0 3 0.00 3 42 1 4 20.00 5 43 0 12 0.00 12 44 0 12 0.00 12 45 0 2 0.00 2 46 0 5 0.00 5 47 0 9 0.00 9 48 0 8 0.00 8 49 0 8 0.00 8 50 0 6 0.00 6 51 0 5 0.00 5 52 0 9 0.00 9 53 0 4 0.00 4 54 0 5 0.00 5 55 0 5 0.00 5 56 0 5 0.00 5 57 0 12 0.00 12 58 0 7 0.00 7 59 1 6 14.29 7 60 0 5 0.00 5 61 0 3 0.00 3 62 0 5 0.00 5 63 0 7 0.00 7 64 0 8 0.00 8 65 0 11 0.00 11 66 0 11 0.00 11 67 0 3 0.00 3 68 0 4 0.00 4 69 0 7 0.00 7 70 0 7 0.00 7 71 0 4 0.00 4 72 0 3 0.00 3 73 0 4 0.00 4 74 0 2 0.00 2 75 0 3 0.00 3 76 0 6 0.00 6 77 0 3 0.00 3 78 0 0 0 79 0 4 0.00 4 80 0 3 0.00 3 81 0 3 0.00 3 82 0 6 0.00 6 83 0 0 0 84 0 4 0.00 4 85 0 4 0.00 4 86 0 6 0.00 6 87 0 4 0.00 4 88 0 7 0.00 7 89 0 4 0.00 4 90 0 4 0.00 4 91 0 2 0.00 2 92 0 2 0.00 2 93 0 3 0.00 3 94 0 5 0.00 5 95 0 7 0.00 7 96 1 5 16.67 6 97 0 2 0.00 2 98 0 3 0.00 3 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 7 12.50 8 2 2 14 12.50 16 3 3 16 15.79 19 4 3 11 21.43 14 5 0 27 0.00 27 6 0 21 0.00 21 7 0 11 0.00 11 8 0 18 0.00 18 9 1 22 4.35 23 10 0 20 0.00 20 11 0 12 0.00 12 12 1 13 7.14 14 13 0 22 0.00 22 14 0 13 0.00 13 15 0 16 0.00 16 16 0 11 0.00 11 17 2 10 16.67 12 18 2 14 12.50 16 19 0 15 0.00 15 20 0 6 0.00 6 21 0 11 0.00 11 22 0 14 0.00 14 23 0 4 0.00 4 24 0 8 0.00 8 25 0 10 0.00 10 26 0 13 0.00 13 27 0 16 0.00 16 28 0 12 0.00 12 29 0 14 0.00 14 30 0 11 0.00 11 31 0 10 0.00 10 32 0 9 0.00 9 33 0 17 0.00 17 34 0 15 0.00 15 35 1 7 12.50 8 36 0 10 0.00 10 37 0 11 0.00 11 38 0 10 0.00 10 39 0 10 0.00 10 40 0 6 0.00 6 41 0 12 0.00 12 42 0 6 0.00 6 43 0 8 0.00 8 44 0 11 0.00 11 45 0 10 0.00 10 46 0 6 0.00 6 47 0 8 0.00 8 48 1 9 10.00 10 49 0 10 0.00 10 50 0 8 0.00 8 51 0 12 0.00 12 52 0 13 0.00 13 53 0 3 0.00 3 54 1 7 12.50 8 55 0 7 0.00 7 56 0 3 0.00 3 57 0 5 0.00 5 58 0 9 0.00 9 59 0 5 0.00 5 60 0 8 0.00 8 61 0 4 0.00 4 62 0 5 0.00 5 63 0 6 0.00 6 64 0 8 0.00 8 65 0 4 0.00 4 66 1 6 14.29 7 67 0 10 0.00 10 68 2 9 18.18 11 69 0 6 0.00 6 70 0 4 0.00 4 71 0 12 0.00 12 72 0 3 0.00 3 73 0 7 0.00 7 74 0 6 0.00 6 75 0 4 0.00 4 76 0 4 0.00 4 77 0 6 0.00 6 78 0 7 0.00 7 79 0 4 0.00 4 80 0 5 0.00 5 81 0 1 0.00 1 82 0 4 0.00 4 83 0 6 0.00 6 84 0 7 0.00 7 85 1 4 20.00 5 86 0 3 0.00 3 87 0 10 0.00 10 88 0 3 0.00 3 89 0 6 0.00 6 90 0 2 0.00 2 91 0 0 0 92 0 0 0 93 1 5 16.67 6 94 0 5 0.00 5 95 0 6 0.00 6 96 0 4 0.00 4 97 0 7 0.00 7 98 0 1 0.00 1 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 8 20.00 10 2 4 6 40.00 10 3 2 9 18.18 11 4 1 6 14.29 7 5 0 9 0.00 9 6 0 17 0.00 17 7 1 30 3.23 31 8 0 23 0.00 23 9 0 22 0.00 22 10 0 25 0.00 25 11 1 32 3.03 33 12 0 21 0.00 21 13 0 29 0.00 29 14 0 30 0.00 30 15 0 26 0.00 26 16 0 26 0.00 26 17 0 23 0.00 23 18 0 26 0.00 26 19 0 23 0.00 23 20 0 20 0.00 20 21 0 18 0.00 18 22 0 19 0.00 19 23 0 19 0.00 19 24 0 19 0.00 19 25 0 15 0.00 15 26 0 14 0.00 14 27 1 16 5.88 17 28 0 28 0.00 28 29 0 16 0.00 16 30 0 12 0.00 12 31 0 22 0.00 22 32 0 17 0.00 17 33 0 21 0.00 21 34 0 27 0.00 27 35 0 23 0.00 23 36 0 25 0.00 25 37 0 16 0.00 16 38 0 19 0.00 19 39 0 20 0.00 20 40 1 19 5.00 20 41 0 15 0.00 15 42 0 15 0.00 15 43 0 20 0.00 20 44 0 22 0.00 22 45 0 14 0.00 14 46 0 17 0.00 17 47 0 16 0.00 16 48 0 15 0.00 15 49 0 13 0.00 13 50 0 17 0.00 17 51 0 11 0.00 11 52 1 18 5.26 19 53 0 14 0.00 14 54 0 8 0.00 8 55 0 15 0.00 15 56 0 8 0.00 8 57 0 7 0.00 7 58 0 15 0.00 15 59 0 13 0.00 13 60 1 9 10.00 10 61 0 6 0.00 6 62 0 7 0.00 7 63 0 10 0.00 10 64 0 14 0.00 14 65 0 12 0.00 12 66 0 7 0.00 7 67 0 7 0.00 7 68 0 16 0.00 16 69 0 13 0.00 13 70 0 13 0.00 13 71 0 13 0.00 13 72 0 7 0.00 7 73 0 13 0.00 13 74 0 11 0.00 11 75 0 9 0.00 9 76 0 14 0.00 14 77 0 11 0.00 11 78 1 7 12.50 8 79 1 11 8.33 12 80 0 12 0.00 12 81 0 7 0.00 7 82 0 3 0.00 3 83 0 6 0.00 6 84 0 7 0.00 7 85 0 10 0.00 10 86 0 9 0.00 9 87 0 10 0.00 10 88 0 4 0.00 4 89 0 6 0.00 6 90 0 14 0.00 14 91 0 7 0.00 7 92 0 5 0.00 5 93 0 8 0.00 8 94 0 1 0.00 1 95 0 4 0.00 4 96 0 7 0.00 7 97 0 5 0.00 5 98 1 9 10.00 10