/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-159_S6_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-159_S6_L002_R2_001_val_2.fq.gz
Data processed at 14:11 on 2019-11-04
Alignment Stats
Sequence pairs analysed in total
100000
Paired-end alignments with a unique best hit
488
Pairs without alignments under any condition
99512
Pairs that did not map uniquely
0
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
19125
Methylated C's in CpG context
72
Methylated C's in CHG context
192
Methylated C's in CHH context
85
Methylated C's in Unknown context
2
Unmethylated C's in CpG context
5542
Unmethylated C's in CHG context
5229
Unmethylated C's in CHH context
8005
Unmethylated C's in Unknown context
4
Percentage methylation (CpG context)
1.3%
Percentage methylation (CHG context)
3.5%
Percentage methylation (CHH context)
1.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
350
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
138
original bottom strand
Deduplication
Alignments analysed
488
Unique alignments
452
Duplicates removed
36
Duplicated alignments were found at 29 different positions
