EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 734 lines in total Total number of methylation call strings processed: 1468 Final Cytosine Methylation Report ================================= Total number of C's analysed: 19966 Total methylated C's in CpG context: 72 Total methylated C's in CHG context: 222 Total methylated C's in CHH context: 91 Total C to T conversions in CpG context: 5701 Total C to T conversions in CHG context: 5462 Total C to T conversions in CHH context: 8418 C methylated in CpG context: 1.2% C methylated in CHG context: 3.9% C methylated in CHH context: 1.1%