CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 3 60 4.76 63 2 3 85 3.41 88 3 1 62 1.59 63 4 0 42 0.00 42 5 0 44 0.00 44 6 0 25 0.00 25 7 0 42 0.00 42 8 0 31 0.00 31 9 0 32 0.00 32 10 0 36 0.00 36 11 0 40 0.00 40 12 0 35 0.00 35 13 0 30 0.00 30 14 1 37 2.63 38 15 0 41 0.00 41 16 0 48 0.00 48 17 0 39 0.00 39 18 0 46 0.00 46 19 0 45 0.00 45 20 0 37 0.00 37 21 0 40 0.00 40 22 1 48 2.04 49 23 1 38 2.56 39 24 0 45 0.00 45 25 0 36 0.00 36 26 0 41 0.00 41 27 0 53 0.00 53 28 0 31 0.00 31 29 0 37 0.00 37 30 1 41 2.38 42 31 1 42 2.33 43 32 0 41 0.00 41 33 0 44 0.00 44 34 0 46 0.00 46 35 0 41 0.00 41 36 0 34 0.00 34 37 0 40 0.00 40 38 0 34 0.00 34 39 0 34 0.00 34 40 0 39 0.00 39 41 0 34 0.00 34 42 0 31 0.00 31 43 1 34 2.86 35 44 3 40 6.98 43 45 1 38 2.56 39 46 0 26 0.00 26 47 1 38 2.56 39 48 1 36 2.70 37 49 0 43 0.00 43 50 0 44 0.00 44 51 1 46 2.13 47 52 0 36 0.00 36 53 1 38 2.56 39 54 0 34 0.00 34 55 1 36 2.70 37 56 1 41 2.38 42 57 0 42 0.00 42 58 1 36 2.70 37 59 0 47 0.00 47 60 0 31 0.00 31 61 1 39 2.50 40 62 1 37 2.63 38 63 0 39 0.00 39 64 0 30 0.00 30 65 0 30 0.00 30 66 0 30 0.00 30 67 1 46 2.13 47 68 0 30 0.00 30 69 1 29 3.33 30 70 0 33 0.00 33 71 0 34 0.00 34 72 0 27 0.00 27 73 1 32 3.03 33 74 0 37 0.00 37 75 0 35 0.00 35 76 2 30 6.25 32 77 1 30 3.23 31 78 0 28 0.00 28 79 2 27 6.90 29 80 1 30 3.23 31 81 2 45 4.26 47 82 0 28 0.00 28 83 0 33 0.00 33 84 1 23 4.17 24 85 0 29 0.00 29 86 0 25 0.00 25 87 0 25 0.00 25 88 0 24 0.00 24 89 1 22 4.35 23 90 0 37 0.00 37 91 0 18 0.00 18 92 0 24 0.00 24 93 0 31 0.00 31 94 0 13 0.00 13 95 1 30 3.23 31 96 0 22 0.00 22 97 2 19 9.52 21 98 0 23 0.00 23 99 0 28 0.00 28 100 1 21 4.55 22 101 0 19 0.00 19 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 41 28 59.42 69 2 23 22 51.11 45 3 8 28 22.22 36 4 7 36 16.28 43 5 2 31 6.06 33 6 0 37 0.00 37 7 1 40 2.44 41 8 1 29 3.33 30 9 4 25 13.79 29 10 0 51 0.00 51 11 0 37 0.00 37 12 0 33 0.00 33 13 1 41 2.38 42 14 1 39 2.50 40 15 0 36 0.00 36 16 1 31 3.12 32 17 0 32 0.00 32 18 1 36 2.70 37 19 0 34 0.00 34 20 1 35 2.78 36 21 0 45 0.00 45 22 0 45 0.00 45 23 1 32 3.03 33 24 1 45 2.17 46 25 1 35 2.78 36 26 0 44 0.00 44 27 2 45 4.26 47 28 0 42 0.00 42 29 0 51 0.00 51 30 1 37 2.63 38 31 1 33 2.94 34 32 6 43 12.24 49 33 2 42 4.55 44 34 0 46 0.00 46 35 0 44 0.00 44 36 1 45 2.17 46 37 1 41 2.38 42 38 1 34 2.86 35 39 3 46 6.12 49 40 0 45 0.00 45 41 1 29 3.33 30 42 0 39 0.00 39 43 0 48 0.00 48 44 1 30 3.23 31 45 0 29 0.00 29 46 0 33 0.00 33 47 0 36 0.00 36 48 0 36 0.00 36 49 0 34 0.00 34 50 0 27 0.00 27 51 0 46 0.00 46 52 1 30 3.23 31 53 1 40 2.44 41 54 1 48 2.04 49 55 1 41 2.38 42 56 0 34 0.00 34 57 1 39 2.50 40 58 0 35 0.00 35 59 1 26 3.70 27 60 0 42 0.00 42 61 0 34 0.00 34 62 0 36 0.00 36 63 0 44 0.00 44 64 0 35 0.00 35 65 0 37 0.00 37 66 1 34 2.86 35 67 1 33 2.94 34 68 0 29 0.00 29 69 0 39 0.00 39 70 2 35 5.41 37 71 0 22 0.00 22 72 1 35 2.78 36 73 3 21 12.50 24 74 2 33 5.71 35 75 0 25 0.00 25 76 0 32 0.00 32 77 0 30 0.00 30 78 0 38 0.00 38 79 0 38 0.00 38 80 0 31 0.00 31 81 0 25 0.00 25 82 0 34 0.00 34 83 0 31 0.00 31 84 1 31 3.12 32 85 0 29 0.00 29 86 0 23 0.00 23 87 1 31 3.12 32 88 1 22 4.35 23 89 0 22 0.00 22 90 1 28 3.45 29 91 2 20 9.09 22 92 1 31 3.12 32 93 2 21 8.70 23 94 2 25 7.41 27 95 1 28 3.45 29 96 2 23 8.00 25 97 0 23 0.00 23 98 2 23 8.00 25 99 2 11 15.38 13 100 0 13 0.00 13 101 1 19 5.00 20 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 18 18 50.00 36 2 8 21 27.59 29 3 4 35 10.26 39 4 3 30 9.09 33 5 0 52 0.00 52 6 1 47 2.08 48 7 0 61 0.00 61 8 0 48 0.00 48 9 0 44 0.00 44 10 0 42 0.00 42 11 0 41 0.00 41 12 0 41 0.00 41 13 0 55 0.00 55 14 0 45 0.00 45 15 0 55 0.00 55 16 1 57 1.72 58 17 0 66 0.00 66 18 0 65 0.00 65 19 0 73 0.00 73 20 0 54 0.00 54 21 1 62 1.59 63 22 2 63 3.08 65 23 0 58 0.00 58 24 2 79 2.47 81 25 0 51 0.00 51 26 0 71 0.00 71 27 1 72 1.37 73 28 0 73 0.00 73 29 1 67 1.47 68 30 0 75 0.00 75 31 0 70 0.00 70 32 0 66 0.00 66 33 0 68 0.00 68 34 2 56 3.45 58 35 0 64 0.00 64 36 0 53 0.00 53 37 0 63 0.00 63 38 1 75 1.32 76 39 0 57 0.00 57 40 2 53 3.64 55 41 0 58 0.00 58 42 0 70 0.00 70 43 1 63 1.56 64 44 1 61 1.61 62 45 0 70 0.00 70 46 1 79 1.25 80 47 1 75 1.32 76 48 0 63 0.00 63 49 1 52 1.89 53 50 0 60 0.00 60 51 0 61 0.00 61 52 0 63 0.00 63 53 0 50 0.00 50 54 1 68 1.45 69 55 0 61 0.00 61 56 0 51 0.00 51 57 0 63 0.00 63 58 1 54 1.82 55 59 0 62 0.00 62 60 2 58 3.33 60 61 0 54 0.00 54 62 1 43 2.27 44 63 2 58 3.33 60 64 0 47 0.00 47 65 3 50 5.66 53 66 1 55 1.79 56 67 0 48 0.00 48 68 1 58 1.69 59 69 0 48 0.00 48 70 1 51 1.92 52 71 1 40 2.44 41 72 0 54 0.00 54 73 1 56 1.75 57 74 0 51 0.00 51 75 0 48 0.00 48 76 0 50 0.00 50 77 0 48 0.00 48 78 0 69 0.00 69 79 1 50 1.96 51 80 1 47 2.08 48 81 1 49 2.00 50 82 0 35 0.00 35 83 0 40 0.00 40 84 1 38 2.56 39 85 1 47 2.08 48 86 1 42 2.33 43 87 3 38 7.32 41 88 0 43 0.00 43 89 0 36 0.00 36 90 0 34 0.00 34 91 0 39 0.00 39 92 1 41 2.38 42 93 0 41 0.00 41 94 0 35 0.00 35 95 0 39 0.00 39 96 2 30 6.25 32 97 1 34 2.86 35 98 1 33 2.94 34 99 0 25 0.00 25 100 0 19 0.00 19 101 1 40 2.44 41 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5 21 19.23 26 2 3 19 13.64 22 3 3 36 7.69 39 4 4 26 13.33 30 5 1 36 2.70 37 6 0 25 0.00 25 7 0 15 0.00 15 8 0 17 0.00 17 9 0 19 0.00 19 10 0 19 0.00 19 11 0 15 0.00 15 12 0 26 0.00 26 13 0 27 0.00 27 14 0 15 0.00 15 15 0 23 0.00 23 16 0 13 0.00 13 17 0 9 0.00 9 18 0 20 0.00 20 19 0 16 0.00 16 20 0 19 0.00 19 21 0 23 0.00 23 22 0 11 0.00 11 23 0 25 0.00 25 24 0 14 0.00 14 25 0 20 0.00 20 26 1 16 5.88 17 27 0 12 0.00 12 28 0 15 0.00 15 29 0 15 0.00 15 30 0 18 0.00 18 31 0 17 0.00 17 32 0 14 0.00 14 33 0 12 0.00 12 34 1 9 10.00 10 35 0 10 0.00 10 36 0 17 0.00 17 37 0 20 0.00 20 38 0 9 0.00 9 39 0 15 0.00 15 40 0 10 0.00 10 41 0 11 0.00 11 42 0 5 0.00 5 43 0 15 0.00 15 44 0 15 0.00 15 45 0 12 0.00 12 46 0 11 0.00 11 47 1 11 8.33 12 48 1 10 9.09 11 49 0 10 0.00 10 50 0 13 0.00 13 51 0 8 0.00 8 52 0 10 0.00 10 53 0 10 0.00 10 54 0 10 0.00 10 55 0 11 0.00 11 56 0 9 0.00 9 57 0 4 0.00 4 58 0 7 0.00 7 59 0 13 0.00 13 60 0 9 0.00 9 61 0 6 0.00 6 62 0 6 0.00 6 63 0 8 0.00 8 64 0 7 0.00 7 65 0 9 0.00 9 66 0 6 0.00 6 67 0 12 0.00 12 68 0 4 0.00 4 69 0 9 0.00 9 70 0 6 0.00 6 71 0 4 0.00 4 72 0 6 0.00 6 73 0 3 0.00 3 74 0 7 0.00 7 75 0 9 0.00 9 76 0 8 0.00 8 77 0 10 0.00 10 78 0 11 0.00 11 79 0 5 0.00 5 80 0 8 0.00 8 81 0 8 0.00 8 82 0 7 0.00 7 83 0 4 0.00 4 84 0 2 0.00 2 85 0 4 0.00 4 86 0 5 0.00 5 87 0 4 0.00 4 88 0 4 0.00 4 89 0 3 0.00 3 90 0 1 0.00 1 91 0 8 0.00 8 92 0 4 0.00 4 93 0 4 0.00 4 94 0 7 0.00 7 95 0 2 0.00 2 96 0 3 0.00 3 97 0 6 0.00 6 98 0 4 0.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1 8 11.11 9 2 4 27 12.90 31 3 2 22 8.33 24 4 6 17 26.09 23 5 1 24 4.00 25 6 2 38 5.00 40 7 0 11 0.00 11 8 0 20 0.00 20 9 0 17 0.00 17 10 1 24 4.00 25 11 0 26 0.00 26 12 0 14 0.00 14 13 0 17 0.00 17 14 0 27 0.00 27 15 0 22 0.00 22 16 0 17 0.00 17 17 0 18 0.00 18 18 0 15 0.00 15 19 1 18 5.26 19 20 1 26 3.70 27 21 0 12 0.00 12 22 0 15 0.00 15 23 0 11 0.00 11 24 1 18 5.26 19 25 0 19 0.00 19 26 0 14 0.00 14 27 0 13 0.00 13 28 0 15 0.00 15 29 0 15 0.00 15 30 2 17 10.53 19 31 0 19 0.00 19 32 0 14 0.00 14 33 0 11 0.00 11 34 1 14 6.67 15 35 0 6 0.00 6 36 0 14 0.00 14 37 0 13 0.00 13 38 0 12 0.00 12 39 0 11 0.00 11 40 0 8 0.00 8 41 1 20 4.76 21 42 0 8 0.00 8 43 0 6 0.00 6 44 0 20 0.00 20 45 0 11 0.00 11 46 0 8 0.00 8 47 0 12 0.00 12 48 0 13 0.00 13 49 0 10 0.00 10 50 0 7 0.00 7 51 0 15 0.00 15 52 1 9 10.00 10 53 1 7 12.50 8 54 0 6 0.00 6 55 0 10 0.00 10 56 0 3 0.00 3 57 0 12 0.00 12 58 0 4 0.00 4 59 0 10 0.00 10 60 0 11 0.00 11 61 0 11 0.00 11 62 0 13 0.00 13 63 0 5 0.00 5 64 0 10 0.00 10 65 0 10 0.00 10 66 0 5 0.00 5 67 1 5 16.67 6 68 1 12 7.69 13 69 0 9 0.00 9 70 0 11 0.00 11 71 1 8 11.11 9 72 0 9 0.00 9 73 0 8 0.00 8 74 0 4 0.00 4 75 0 8 0.00 8 76 0 7 0.00 7 77 0 4 0.00 4 78 0 12 0.00 12 79 0 7 0.00 7 80 0 5 0.00 5 81 0 6 0.00 6 82 0 6 0.00 6 83 0 8 0.00 8 84 0 5 0.00 5 85 2 6 25.00 8 86 0 4 0.00 4 87 0 8 0.00 8 88 0 7 0.00 7 89 0 7 0.00 7 90 0 4 0.00 4 91 1 8 11.11 9 92 0 1 0.00 1 93 0 3 0.00 3 94 0 7 0.00 7 95 0 5 0.00 5 96 0 4 0.00 4 97 0 8 0.00 8 98 0 3 0.00 3 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2 11 15.38 13 2 3 8 27.27 11 3 4 13 23.53 17 4 1 4 20.00 5 5 0 18 0.00 18 6 0 29 0.00 29 7 0 31 0.00 31 8 1 36 2.70 37 9 1 48 2.04 49 10 0 39 0.00 39 11 1 37 2.63 38 12 1 24 4.00 25 13 0 44 0.00 44 14 0 37 0.00 37 15 0 45 0.00 45 16 0 27 0.00 27 17 0 29 0.00 29 18 0 35 0.00 35 19 0 29 0.00 29 20 0 21 0.00 21 21 0 24 0.00 24 22 0 21 0.00 21 23 1 33 2.94 34 24 0 20 0.00 20 25 1 22 4.35 23 26 1 28 3.45 29 27 0 26 0.00 26 28 0 29 0.00 29 29 0 26 0.00 26 30 0 21 0.00 21 31 0 31 0.00 31 32 0 24 0.00 24 33 1 29 3.33 30 34 2 27 6.90 29 35 0 21 0.00 21 36 0 28 0.00 28 37 0 23 0.00 23 38 0 25 0.00 25 39 0 24 0.00 24 40 0 22 0.00 22 41 0 17 0.00 17 42 1 21 4.55 22 43 0 22 0.00 22 44 1 25 3.85 26 45 0 25 0.00 25 46 0 22 0.00 22 47 0 13 0.00 13 48 0 24 0.00 24 49 0 18 0.00 18 50 0 23 0.00 23 51 0 19 0.00 19 52 0 27 0.00 27 53 0 20 0.00 20 54 0 17 0.00 17 55 0 18 0.00 18 56 0 21 0.00 21 57 0 22 0.00 22 58 0 19 0.00 19 59 0 17 0.00 17 60 0 15 0.00 15 61 0 20 0.00 20 62 0 21 0.00 21 63 0 11 0.00 11 64 0 12 0.00 12 65 0 9 0.00 9 66 0 14 0.00 14 67 0 16 0.00 16 68 0 15 0.00 15 69 1 15 6.25 16 70 0 11 0.00 11 71 0 10 0.00 10 72 0 14 0.00 14 73 0 7 0.00 7 74 1 16 5.88 17 75 0 17 0.00 17 76 0 12 0.00 12 77 0 13 0.00 13 78 0 13 0.00 13 79 0 17 0.00 17 80 0 9 0.00 9 81 0 7 0.00 7 82 0 14 0.00 14 83 0 11 0.00 11 84 0 7 0.00 7 85 0 8 0.00 8 86 0 10 0.00 10 87 0 12 0.00 12 88 0 10 0.00 10 89 0 7 0.00 7 90 0 4 0.00 4 91 1 7 12.50 8 92 0 10 0.00 10 93 0 13 0.00 13 94 0 5 0.00 5 95 0 7 0.00 7 96 0 11 0.00 11 97 1 5 16.67 6 98 0 10 0.00 10